Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00173 ATGGGTTCGAAATCGAAGGAAAACAATTCAAAGACCTCTGTGGGAGAGGGAGCGAGTCCTGGAAAGATTTTCATCGGAGGACTCCATAAGGATACGAGCTTAGCTACATTCACAAAATATTTCGGAAAATATGGAGAGATAACGGATTCGGTGATAATGAAAGATCGGTACACTGGGCAACCGAGGGGTTTTGGTTTTATAACCTATGCCGACCCTTCAGTTGTTGACAAAGTTATTGAAGAAACCCATGTCATCAATGGAAAACAAGTTGAAATTAAAAGAACCATTCCAAAAGGCTCTGTACAATCTAAAGATTTCAAAACAAAGAAGATCTTTGTTGGTGGGGTTCCGTCAACAATCACTGAAGATGAGTTCAAGAATTTCTTCTCCAAGTACGGGAAGGTGGTGGAGAACCAGATCATACGAGATCATGCAACCAACCGCTCTCGAGGGTTCGGCTTTATAATCTTTGATAGTGAACAAGTTGTAGATGATATGTTAGCCGAAGGAAATATGATTGATATGGCGGGTACCCAGGTGGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAATCAACCACCTGCTCCTGCATTTGGTAGTGACTCTAGGGCTCATTCTTTCGGTGATGGTCTTGGTGGTTTTGGTGACTCTTATAGTGGTTTTGGCGGCAGTGGGTTCGGCCCTGCTCCCTATAGGACACCAGGAGGTCTTGCAAGTAGGCTTGGTGGTTACGGTGGGTATGGTGGTAGTGGCAGCGAATTTGGTAGTGGTTATGGGGGTTTTGGCAGCAGTGACTTAGGTGGTTACCGTGGAGAATCTTCCCTTGGTTACACTAGTCGCCTTGGACCATATGGCGGAGGCTTTGGTGGGGGATATGGGGGAAGTGGATTAGGTGGTTATGGCCGAGGAGGTGAAGGCTATGGAAGTTACGGTTCAGGTTATGGTGGTGGTTATGATTCTGGCCCTGGTGCCAGTTATGGTGGAGCAGGCGGGTTGTATGGAAGTAGAGCAGGTTATGGCAGTAGTCGGTACCATCCTTACGGAAGGTAG 1053 0.4663 MGSKSKENNSKTSVGEGASPGKIFIGGLHKDTSLATFTKYFGKYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEETHVINGKQVEIKRTIPKGSVQSKDFKTKKIFVGGVPSTITEDEFKNFFSKYGKVVENQIIRDHATNRSRGFGFIIFDSEQVVDDMLAEGNMIDMAGTQVEIKKAEPKKASNQPPAPAFGSDSRAHSFGDGLGGFGDSYSGFGGSGFGPAPYRTPGGLASRLGGYGGYGGSGSEFGSGYGGFGSSDLGGYRGESSLGYTSRLGPYGGGFGGGYGGSGLGGYGRGGEGYGSYGSGYGGGYDSGPGASYGGAGGLYGSRAGYGSSRYHPYGR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00173 350 FunFam Heterogeneous nuclear ribonucleoprotein 1 20 101 - -
Eupl06g00173 350 SUPERFAMILY RNA-binding domain, RBD 19 100 IPR035979 GO:0003676
Eupl06g00173 350 Gene3D - 21 98 IPR012677 -
Eupl06g00173 350 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 350 - -
Eupl06g00173 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 97 IPR000504 GO:0003723
Eupl06g00173 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 171 IPR000504 GO:0003723
Eupl06g00173 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 84 IPR000504 GO:0003723
Eupl06g00173 350 Gene3D - 99 228 IPR012677 -
Eupl06g00173 350 SMART rrm1_1 22 93 IPR000504 GO:0003723
Eupl06g00173 350 SMART rrm1_1 110 183 IPR000504 GO:0003723
Eupl06g00173 350 SUPERFAMILY RNA-binding domain, RBD 97 195 IPR035979 GO:0003676
Eupl06g00173 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Eupl06g00173 350 FunFam Heterogeneous nuclear ribonucleoprotein 1 102 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00173 Eupl-Chr6 2699675 2702155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00173 23 193 Eukaryotic Initiation Factors Gene Family AT4G34110 23.158 1.72e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00173 K12741 - nnu:104594284 418.698