Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00171 ATGAATACTCGTTACTATTTTCCGCCAGAGTCAATGTATGGTTCTGGTATTCCAGTCTCATTTTCATCAAGTTCTCTGGCCGGAGATCATTTGGCCATAGGTGTCCGAAATGGGTCATCCCGCACTCTCCCCTCGTCGGTCTTGGTGAGAACAGCGATGAGGATATCTAGAGCAAGATGGTTCAGTTTCCTGAGAAGAGTCTTCCATTACCAGAACGGGTCAAGGTCTGATCTTGGATCGAATCCTTTCAACTCTGGCAGTTGGATCGCGTTGGAGTTCATAGTTTGGATTGTTCAAATAAGCATCATCACAGTTACTCTGGCAATCTCTAAAGAAGAGAAGCCAGTTTGGCCTCTGAGAATGTGGATTGTCGGGTATGACGTCGGGTGCTTCCTCAGTCTGCCTCTACTGTATTGGCGCTATCGACATCCTTTAGTGACCCAAGGAAATGGCTTCCATCTCTCTGAACAGCAGAGGAGCAATGAAGAATCCAGGGGTTCGCATTTAATGAACAAATCCCGGACTCTCCTCGAGCTGTTTTTTGCAATATGGTTTGTGATGGGTAATGTTTGGGTCTTTGATTCTCGCTTTGGATCATTCAATCGAGCTCCGAAGCTGCATGTCCTCTGCATTTCACTACTTGCTTGGAATGCTGTCAGCTACTCTTTTCCATTCCTACTGTTTGTATTGCTCTGTTGCTGTGTGCCGTTGATCAGCAAATTCCTCGGATATAACATGAACATGGGTTCCTTTGATAGAGGAGCATCTGATGATCAGATTTCCAGGCTACCCAGCTGGAGATATAAAGAAGTTGATGCCAAGTTAGAGTTTGGTGATGATGATGACGACAATTCAGACCTTACAAATGAAAATTCGGAATGCTGTATTTGCTTAGCCAAATACAGAGACAAGGAAGAGGTGAGGCAATTACCATGTTCCCATCTGTTTCACCTGAAGTGTGTGGATCAGTGGCTCAGAATTATATCTTGCTGTCCTCTTTGTAAACAAGAACTGGAGAGATAA 1023 0.4457 MNTRYYFPPESMYGSGIPVSFSSSSLAGDHLAIGVRNGSSRTLPSSVLVRTAMRISRARWFSFLRRVFHYQNGSRSDLGSNPFNSGSWIALEFIVWIVQISIITVTLAISKEEKPVWPLRMWIVGYDVGCFLSLPLLYWRYRHPLVTQGNGFHLSEQQRSNEESRGSHLMNKSRTLLELFFAIWFVMGNVWVFDSRFGSFNRAPKLHVLCISLLAWNAVSYSFPFLLFVLLCCCVPLISKFLGYNMNMGSFDRGASDDQISRLPSWRYKEVDAKLEFGDDDDDNSDLTNENSECCICLAKYRDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQELER* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00171 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 339 IPR013083 -
Eupl06g00171 340 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Eupl06g00171 340 Pfam RING-like zinc finger 293 321 IPR001841 -
Eupl06g00171 340 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 37 338 - -
Eupl06g00171 340 SMART ring_2 294 334 IPR001841 -
Eupl06g00171 340 SUPERFAMILY RING/U-box 293 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00171 Eupl-Chr6 2677045 2679862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00171 1 338 C3H Transcription Factor Family AT4G26580 63.743 5.35e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00171 - - nnu:104588690 551.592