Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00142 ATGCCTGCAAACCACCCAAAGAATCTCCTTCTTTCTTTCAATATCTTCTCCTTCACCTTCCTTCTCACAATAAACTCTCTCTTCTTCTTGTGTTGTTTCTCCATTGATGAACAGGGCCAAACTCTTCTATCATGGAAAAACAGTCTAAACAGCTCCACAGATGTGCTGAGAACATGGAATCCTTCAGATCCAAACCCTTGCAACTGGTTCGGGATCTTCTGCAACTCAAACGCGAAAGTAGTCCAGATAAGCTTGAAATCAGTGGATTTGCAAGGTCCATTTCCTTCAAATTTCCAATCTCTCAAGTCCTTGATGACCCTTATCCTCTCGGCGACCAATCTAACTGGTCCAATTCCAAGAGAAATTGGAGAATATCAAGAATTGAGTCTTGTTGATCTCAGCAGAAATGCTATCTCTAGCGAAATTCCGGTCGAAATTTGCAGGCTAAGCAAGCTGCAAAGTCTCTCTCTCAGTTCGAATTTGCTTGAAGGCGGAATTCCTTACGACATTGGAAATCTTTCGAGCCTCGTGTATCTGACGCTCTACGATAATCAGCTCAGTGGTGAAATTCCGAAGAGTATAGGAAAATTAAGTAAGCTAGAAATCTTTCGAGCAGGCGGAAATCAAAATCTCAAAGGCGAACTGCCATGGGAGATTGGAAATTGCAGCAATTTAGTTATGTTGGGGCTAGCAGAAACCAGCATTTCTGGAAGTCTTCCTACTTCCATAGGGTTGCTAAAACGGATTCAAACCATAGCGATTTATTCATCTCTTTTATCTGGTCCTATCCCAGAAGAGATTAGAAACTGTACTGAATTACAGAACCTGTACTTATATCAGAACTCAATCTCAGGTTCAATCCCAAGGCAAATTGGGGAGCTACGGAAGCTTCAGAGTCTGCTATTGTGGCAGAACAGTTTGGTGGGTACGATCCCATCTGAGCTCGGAAGCTGCACAGAGCTGGTCGTTATGGATTTATCGGAGAATCTGTTATCAGGCAGTATCCCAAAAAGTTTTGGAAACCTTTTGGGTCTTCAAGAGCTTCAGCTGAGCGTTAATCAGTTAACAGGTACAATACCTTCTGAAATCTCAAACTGCAATATGCTGACTCATCTTGAAGTTGACAACAACGACATTTCCGGTGAGATTCCTGTTGGTATTGGCAAACTGAAGAGCTTGACGCTGTTCTTCGCATGGCAGAACAGTCTGACAGGGAATATCCCGGAGAGTCTAGCCGAGTGTCAGAATCTTCAGGCTCTTGATCTATCTTACAACAACCTCATGGGCTCAATACCGAAACAGATTTTTGGGTTGAGAAATCTCACCAAGTTGCTGCTTCTTTCTAATGATTTATCGGGTTTTATACCATCGGACATTGGAAACTGCACAAACTTGTATCGGTTTCGATCGAACAACAACAGGCTTGCAGGTACAATTCCAGCCGAGATTGGGACTTTGAAGAATTTGAATTTCCTCGACATGAGTAACAACAAGTTGGTGGGAGAGATTCCACCATCGATCTCTGGATGTGAAAATCTCGAGTTTCTCGATCTCCATTCAAATGGGCTAACTGGTTCTGTGCCTGAAACACTGCCAAAAAGCCTACTATTCGTTGACATTTCAAATAATAGGCTTAGAGGTCCATTGACTCCAAGTCTTGGATCTTTGACTGAGTTGACTAAACTAGTTCTCGGAAAGAATCAACTTTCCGGCAGAATTCCAGCAGAGCTCATGTCTTGCAGTAAACTACAGTTACTAGATCTCGGGGACAACAGTTTCTCGGGTGAGATACCAAAGGAATTGGGTCAGATTCCGGCGCTCGAGATTTCTCTCAATCTAAGCTGTAACAAGCTTTCAGGTGAAATCCCAGCCCAATTCTCCGGTCTTGACAAGCTCGGAATCCTTGACCTCTCCCACAACGAACTCATCGGGAACGTAAACACGCTCGCCACCCTTCAGAACCTTGTTGCTCTCAACATCTCCTTCAATGAATTCTCCGGCGAATTGCCCAACACTCCATTCTTCCGACAACTCCCACTAAGTGATCTCACTGGGAACCGGGCACTATACATCTCCGACGGGGTAGTGGGGCCTACCGTCCGCATGGGACCTACCGGTCGTTCCAAATCAGCATGGAAGTTAGCAATGGCTGTCCTCATCAGCGCCAGTGCAGTACTACTACTACTTGCAGTGTACATGCTTGTACGAGCACGTAACAGCGGACCAACAGTGGATGACACATGGGAGATGACGCTTTATCAGAAGCTTGAGTTCTCAGTTGATGATGTTGTCCGGAATCTGACATCAGCCAATGTAATAGGTACTGGGAGCTCTGGGGTAGTCTACAGGGTGGCGATCCCAAACGGGGAGACACTTGCAGTGAAGAAGATGTGGTCGTCCGAGGAATCGGGAGCATTCGGATCCGAGATTCAGACATTGGGGTCAATCCGACACAGGAACATTGTGCGACTGTTGGGATCGTGTGCAAACCGGACCATGAAGCTGTTGTTATATGATTACCTTCCGAACGGGAGCTTAAGCGCGCTCCTTCATGGGGTCGGGAAGGGAGCGGCGGAGTGGGAAGTGAGGTACGAGGTGGTGTTAGGGGTGGCACATGCCCTTGCATACTTGCACCATGACTGTATACCCTCTATCTTGCATGGAGATGTGAAGGCCATGAATGTGTTGTTGGGTCCCAGCTTCGAGCCTTACTTAGCTGATTTTGGGCTAGCTAGGCTTGTGAACAGTGATGAACGTTCCAAATTAAATCTCAAGCCTCAGCTTGCTGGGTCTTATGGATACATGGCTCCTGAGCATGCATCGATGCAGCGCATAACTGAGAAGAGTGATGTGTACAGCTTCGGCGTGGTTCTGATTGAAGTCTTGACCGGAAGACACCCATTAGACCCGACCTTGCCTGGAGGTGCACACTTGGTTCAATGGGTTCGGGACCACTTGCACAACAAGCAGGACCCAGTTGACATTCTTGACCCAAAACTCCAAGGCCGGCCTGACCCTCAGATACACGAGATGCTTCAAACACTTGCAGTTTCATTTTTATGTGTAAGCACCCGAGCTGACGACCGTCCAACAATGAAGGATGTTGTTGCCATGCTGAAGGAGATTTGTCACAAAGATGTTGCAAGGTCGGACAATGACCTGTGCAAGGGCCGCTCAACAACTCTATCCCCTTTGCCTGCTCGGAGTATGGTCTTGCAACAAGGATCATCTGACTGTTCCTTTGCATTCTCAGATGATTCAATCTAA 3267 0.464 MPANHPKNLLLSFNIFSFTFLLTINSLFFLCCFSIDEQGQTLLSWKNSLNSSTDVLRTWNPSDPNPCNWFGIFCNSNAKVVQISLKSVDLQGPFPSNFQSLKSLMTLILSATNLTGPIPREIGEYQELSLVDLSRNAISSEIPVEICRLSKLQSLSLSSNLLEGGIPYDIGNLSSLVYLTLYDNQLSGEIPKSIGKLSKLEIFRAGGNQNLKGELPWEIGNCSNLVMLGLAETSISGSLPTSIGLLKRIQTIAIYSSLLSGPIPEEIRNCTELQNLYLYQNSISGSIPRQIGELRKLQSLLLWQNSLVGTIPSELGSCTELVVMDLSENLLSGSIPKSFGNLLGLQELQLSVNQLTGTIPSEISNCNMLTHLEVDNNDISGEIPVGIGKLKSLTLFFAWQNSLTGNIPESLAECQNLQALDLSYNNLMGSIPKQIFGLRNLTKLLLLSNDLSGFIPSDIGNCTNLYRFRSNNNRLAGTIPAEIGTLKNLNFLDMSNNKLVGEIPPSISGCENLEFLDLHSNGLTGSVPETLPKSLLFVDISNNRLRGPLTPSLGSLTELTKLVLGKNQLSGRIPAELMSCSKLQLLDLGDNSFSGEIPKELGQIPALEISLNLSCNKLSGEIPAQFSGLDKLGILDLSHNELIGNVNTLATLQNLVALNISFNEFSGELPNTPFFRQLPLSDLTGNRALYISDGVVGPTVRMGPTGRSKSAWKLAMAVLISASAVLLLLAVYMLVRARNSGPTVDDTWEMTLYQKLEFSVDDVVRNLTSANVIGTGSSGVVYRVAIPNGETLAVKKMWSSEESGAFGSEIQTLGSIRHRNIVRLLGSCANRTMKLLLYDYLPNGSLSALLHGVGKGAAEWEVRYEVVLGVAHALAYLHHDCIPSILHGDVKAMNVLLGPSFEPYLADFGLARLVNSDERSKLNLKPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLIEVLTGRHPLDPTLPGGAHLVQWVRDHLHNKQDPVDILDPKLQGRPDPQIHEMLQTLAVSFLCVSTRADDRPTMKDVVAMLKEICHKDVARSDNDLCKGRSTTLSPLPARSMVLQQGSSDCSFAFSDDSI* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00142 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 841 1056 - -
Eupl06g00142 1088 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 695 - -
Eupl06g00142 1088 SUPERFAMILY Protein kinase-like (PK-like) 753 1039 IPR011009 -
Eupl06g00142 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Eupl06g00142 1088 SUPERFAMILY L domain-like 34 309 - -
Eupl06g00142 1088 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Eupl06g00142 1088 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Eupl06g00142 1088 Gene3D Phosphorylase Kinase; domain 1 743 840 - -
Eupl06g00142 1088 Gene3D Ribonuclease Inhibitor 207 432 IPR032675 -
Eupl06g00142 1088 FunFam Leucine-rich receptor-like protein kinase family protein 337 609 - -
Eupl06g00142 1088 Gene3D Transferase(Phosphotransferase) domain 1 841 1059 - -
Eupl06g00142 1088 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 305 1039 - -
Eupl06g00142 1088 ProSiteProfiles Protein kinase domain profile. 767 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g00142 1088 FunFam Predicted protein 193 289 - -
Eupl06g00142 1088 FunFam Leucine-rich receptor-like protein kinase family protein 35 192 - -
Eupl06g00142 1088 SUPERFAMILY L domain-like 572 670 - -
Eupl06g00142 1088 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 840 - -
Eupl06g00142 1088 SMART serkin_6 767 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g00142 1088 SMART LRR_typ_2 556 580 IPR003591 -
Eupl06g00142 1088 SMART LRR_typ_2 414 438 IPR003591 -
Eupl06g00142 1088 SMART LRR_typ_2 149 172 IPR003591 -
Eupl06g00142 1088 SMART LRR_typ_2 486 510 IPR003591 -
Eupl06g00142 1088 SMART LRR_typ_2 342 366 IPR003591 -
Eupl06g00142 1088 SMART LRR_typ_2 173 197 IPR003591 -
Eupl06g00142 1088 SMART LRR_typ_2 294 318 IPR003591 -
Eupl06g00142 1088 SMART LRR_sd22_2 270 296 - -
Eupl06g00142 1088 SMART LRR_sd22_2 486 512 - -
Eupl06g00142 1088 SMART LRR_sd22_2 629 648 - -
Eupl06g00142 1088 SMART LRR_sd22_2 149 175 - -
Eupl06g00142 1088 SMART LRR_sd22_2 414 440 - -
Eupl06g00142 1088 ProSitePatterns Protein kinases ATP-binding region signature. 773 796 IPR017441 GO:0005524
Eupl06g00142 1088 PRINTS Leucine-rich repeat signature 417 430 - -
Eupl06g00142 1088 PRINTS Leucine-rich repeat signature 486 499 - -
Eupl06g00142 1088 SUPERFAMILY RNI-like 287 594 - -
Eupl06g00142 1088 Pfam Protein kinase domain 770 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g00142 1088 Gene3D Ribonuclease Inhibitor 433 531 IPR032675 -
Eupl06g00142 1088 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Eupl06g00142 1088 Gene3D Ribonuclease Inhibitor 610 693 IPR032675 -
Eupl06g00142 1088 Gene3D Ribonuclease Inhibitor 532 609 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00142 Eupl-Chr6 2291895 2295560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00142 32 1088 Receptor kinase-like Gene Family AT5G56040 68.254 0.0 1448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Eupl06g00142 Pkinase 5.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00142 - - nnu:104594307 1644.02