Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00096 ATGGGTCGGATTCCGTGTTGTGAGAAAGACAATGTGAAGAGGGGACAGTGGACCCCTGAAGAAGACAACAAGCTCTCCTCCTACATCGCTCAACATGGCACTCGTAACTGGCGTCTCATCCCTAAGAATGCTGGTTTGCAGAGATGTGGGAAGAGTTGTCGCCTCCGCTGGACGAACTATCTCCGTCCGGATCTCAAGCACGGCGAGTTCTCGGAGCTGGAAGAGCAAACCATTGTCAAGCTCCATTCTGTTGTCGGAAATCGGTGGTCATTGATTGCCGCTCAACTGCCTGGCCGCACTGATAACGATGTAAAGAACCACTGGAACACCAAGCTGAAGAAGAAGCTGTCAGGAATGGGAATTGATCCTGTGACCCACAAGCCCTTCTCCCATCTCATGGCTGAGATTGCCACAACCCTGGCTCCACCACAAGTGGCCCACCTGGCCGAGGCGGCACTCGGCTGCTTCAAAGACGAGATGCTCCACCTACTCACTAAGAAACGCATTGACTTCCAATTCCATCGCTCCAGCACACTACCTGGGTATGATGTAGCCCCACTTCCCACCGGGAACCCCACAGCCACATACATTGCCGGGAGACCCGACAACAAGGATGACACAATAGAGAAGATAAAACAAGGCGTGTCAAGGGCCATGCAAGAATCTGACACGCTACCATCTAACAAGCCTTGGGGTATGATCCCTAATGGGGAAACATCTGACAGCTTCGCCGGAGCTTGCAACACATTTGCTACGATGGTATCTGGATTTCGATATGGCCCATCATCTTGTAATGAAGATGATGGTTCTCCGTGGAACCAAAGTATGTGCACAGGGAGCACATGCACCGGTGGGGACCAACAAGGAAGGTTGCATGAGAAAGGTGATCAGGACGAGGATGGAGAAGAGGCCGAGGGTGGAAAAGGTATCAGAAAAGAATCCGGCGTATTTAATTCGGACTGTGTCATGTGGGACTTATCCGATGATCTGATGAATTAA 999 0.5135 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFSELEEQTIVKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKRIDFQFHRSSTLPGYDVAPLPTGNPTATYIAGRPDNKDDTIEKIKQGVSRAMQESDTLPSNKPWGMIPNGETSDSFAGACNTFATMVSGFRYGPSSCNEDDGSPWNQSMCTGSTCTGGDQQGRLHEKGDQDEDGEEAEGGKGIRKESGVFNSDCVMWDLSDDLMN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00096 332 CDD SANT 69 112 IPR001005 -
Eupl06g00096 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Eupl06g00096 332 FunFam Transcription factor RAX3 7 67 - -
Eupl06g00096 332 Gene3D - 14 66 - -
Eupl06g00096 332 Gene3D - 68 128 - -
Eupl06g00096 332 CDD SANT 17 61 IPR001005 -
Eupl06g00096 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl06g00096 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Eupl06g00096 332 MobiDBLite consensus disorder prediction 280 313 - -
Eupl06g00096 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl06g00096 332 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Eupl06g00096 332 FunFam transcription factor MYB80 69 129 - -
Eupl06g00096 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl06g00096 332 SMART sant 13 63 IPR001005 -
Eupl06g00096 332 SMART sant 66 114 IPR001005 -
Eupl06g00096 332 PANTHER F14D16.11-RELATED 1 332 - -
Eupl06g00096 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00096 Eupl-Chr6 1720332 1722347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00096 1 171 MYB Transcription Factor Family AT5G56110 91.813 2.02e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl06g00096 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00096 K09422 - nnu:104588551 577.015