Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00070 ATGGGTGATCAAGAAAACCAGTCTGGGTTTCTTGAAAGTAACGTACGACCCCTCTTGCAAGAAGAAGAAGAAGAAACGGTAGCACATGAGAGATCGGTTTCTTTGGATGGAGAGCCGACGATGAAAGGGATACTAAGAATCACGCTCAAGGTTGGAAAGGCTCGTGAATGCAGCATGGGAGGAGGAGAAGGCCGTGTAGAATACAACCAGAGAACTGAAAAAGAAAACAGAGTCTGCAAGGTCTGTAACAAGATTTTCAGCTCAGGAAGAGCTCTGGGAGGTCATATGAGAGTTCATTCTCAGTTGGGAGATGGCGATGTTTCGAAAAAGAATCAAAATCCGAAGCTCAAGATGGATCACCAGGAGCTCAAGAATCACCTCCGCAATCTTTCGGCTCACATTGCGACTGATGAATCCATTGAAGACAATCCAAAGACTAACAGTAACGCTACTTGTTCGCTGTGTAGAAAGATCTTCCCGTCGATGAAGTCGTTGTTCGGTCATATGAGATGCCATCCTGAAAGACAATGGAGGGGAATTCAACCTCCCCAGAATCAGATGGCCAAGAACAGCTCTTCCTCGACCGTTTCAGATTCCAAAGACAATCGGAAGATGGATGATCATCAGATTGATTCTGCAACAACGACGGCTGGGAGTGGGAGCTCATCTTTGGATCTAGTACAATCTCTTTCTAGCTGGTCAGTTACTGCCAAGAGAGGCCGGAAAAGTATTGCGTCTGTTAATTCAGAGGAACGGTTACCTGATGCGGTCTTTGATCTCATGATGCTAGCTCAAGGAGATTCTCTGGATTCTGCCTTGTCCAACAAGCGAAGAAGCGAAGAATCAGATGGTACGCACAAGGATTTCTCATCAAAGAATGCCAAAATTGAGGACCGTGTTCATGTTTTGGGAAATTTTGATCAGTCAAAGAAGCAAAGAAGCGAGGAGTCAGAAGCAGGAAACATGGATCTTTTGTCTAAGAAGCTGAAAATTGATGGAGGAGAGAGATACATGGGTGTTTCTCGAACTGGGTTTGATCCAGAATCGATGAACATGGACTCTGAATGCAAGTTTTCAGATAGATTTGGAGAAAATTCAGAGCAAAAGAGTGAGGAGGAACCAGAGAGCAAGTACACACATTACAACAAGAACAAGAAGAACAAAAAGAAGAAAATTAAGTTCAGAGATTTAGAAACAGTTGGTGACATGGGTGCGATAGATTACAAGCAGACACCCACAAGAATCACTGAAAGATATAAGTGCACCACTTGCAACAAGTCCTTCCCTTCTCATCAAGCACTGGGTGGTCACAGATCCAGTCATAAAAAAGTGAAGAACAGTTTCCAGGCTACAGATATGGAAGAATTTGCATTAGCAAATGCTTCATCAGAGGAGGAACAATATGGGATTGCCACCAATCTGACCCAATTACCGGAATTCGATGACACCGGATCAAAGATGGTGACAACACATCGTTGCAATATTTGCAACAAGACATTTGCTACAGGTCAGGCTCTGGGGGGCCACAAAAGGTGTCATTTTAATGGCCCAGTTGAAGCTCCTCCTAGCTCAGTGGCGTCGTCACCGGAGAAAGTCAGTAAGACAGTTCGGAAGTTGTTTGATTTCGACCTCAATGAGCTGCCGGCTATGGAAGATGACAACGAAGATTGTCTCCAGTCTGCTTCTACTCAGTCCATAGGCAATAAACATGGACTTGATTATGATGCATCTTCCTCTTACAATTCAGTTAATTAG 1755 0.441 MGDQENQSGFLESNVRPLLQEEEEETVAHERSVSLDGEPTMKGILRITLKVGKARECSMGGGEGRVEYNQRTEKENRVCKVCNKIFSSGRALGGHMRVHSQLGDGDVSKKNQNPKLKMDHQELKNHLRNLSAHIATDESIEDNPKTNSNATCSLCRKIFPSMKSLFGHMRCHPERQWRGIQPPQNQMAKNSSSSTVSDSKDNRKMDDHQIDSATTTAGSGSSSLDLVQSLSSWSVTAKRGRKSIASVNSEERLPDAVFDLMMLAQGDSLDSALSNKRRSEESDGTHKDFSSKNAKIEDRVHVLGNFDQSKKQRSEESEAGNMDLLSKKLKIDGGERYMGVSRTGFDPESMNMDSECKFSDRFGENSEQKSEEEPESKYTHYNKNKKNKKKKIKFRDLETVGDMGAIDYKQTPTRITERYKCTTCNKSFPSHQALGGHRSSHKKVKNSFQATDMEEFALANASSEEEQYGIATNLTQLPEFDDTGSKMVTTHRCNICNKTFATGQALGGHKRCHFNGPVEAPPSSVASSPEKVSKTVRKLFDFDLNELPAMEDDNEDCLQSASTQSIGNKHGLDYDASSSYNSVN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00070 584 Gene3D Classic Zinc Finger 416 513 - -
Eupl06g00070 584 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 70 204 IPR044653 GO:0003700
Eupl06g00070 584 MobiDBLite consensus disorder prediction 341 385 - -
Eupl06g00070 584 ProSitePatterns Zinc finger C2H2 type domain signature. 493 513 IPR013087 -
Eupl06g00070 584 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 1 33 - -
Eupl06g00070 584 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 100 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 556 584 - -
Eupl06g00070 584 ProSitePatterns Zinc finger C2H2 type domain signature. 421 441 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 353 381 - -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 179 198 - -
Eupl06g00070 584 SMART c2h2final6 491 513 IPR013087 -
Eupl06g00070 584 SMART c2h2final6 77 99 IPR013087 -
Eupl06g00070 584 SMART c2h2final6 419 441 IPR013087 -
Eupl06g00070 584 SMART c2h2final6 150 172 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 551 584 - -
Eupl06g00070 584 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 17 33 - -
Eupl06g00070 584 SUPERFAMILY beta-beta-alpha zinc fingers 418 513 IPR036236 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 273 294 - -
Eupl06g00070 584 Pfam C2H2-type zinc finger 78 100 - -
Eupl06g00070 584 Pfam C2H2-type zinc finger 418 443 - -
Eupl06g00070 584 Pfam C2H2-type zinc finger 491 513 - -
Eupl06g00070 584 Pfam C2H2-type zinc finger 152 174 - -
Eupl06g00070 584 ProSiteProfiles Zinc finger C2H2 type domain profile. 419 446 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 271 294 - -
Eupl06g00070 584 ProSiteProfiles Zinc finger C2H2 type domain profile. 491 513 IPR013087 -
Eupl06g00070 584 MobiDBLite consensus disorder prediction 178 206 - -
Eupl06g00070 584 Gene3D Classic Zinc Finger 55 176 - -
Eupl06g00070 584 SUPERFAMILY beta-beta-alpha zinc fingers 78 172 IPR036236 -
Eupl06g00070 584 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00070 Eupl-Chr6 1457377 1459663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00070 416 556 C2H2 Transcription Factor Family AT5G04340 36.301 1.79e-19 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl06g00070 zf-C2H2_6 1.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00070 - - nnu:104594341 377.096