Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00024 ATGCACACATTTTCTGTGACAAAAGACCTTGTTCTCAACGCCGTCTCCAACTCCACCTTCCCATTCTTCTTGTTTTCGCAGAACAATTCTGCATGTTGCATGCCCACATCGCACCACAAAATGGCATCATCTTCTCAGGAAATACTCCTCGCGAGCTCTCCTGATAGTCCCATCGCAGCCTATGATGCCTCCACCGGTGCCATCCTCGCTTACTTCACCGGCAGTCGATCCCCACGTAAAGGCCTCGCCCTTGCTGGAAATACCCTAATTGCCGCTTCTCACATCTTCTCAGACACCGCCTCTGGTTCTGTCCGCCTCTACAACTGGTGGTCGTCCATCGCTTTTCACCACCTTCCCGTTCCCGAACCTGTTGCCCCCTTAGCTGCCACTCCCGACGGCTTATACCTCTTTTCTGGTGGCCTATCAGGCCATATTCACGCCTTAACGCTTCCATCAGGTGATCTCCTTCGCTCGTTTCCTGCTCATTGTAAGCCCGTCTCTTGTCTCACCATCAACGACGATGCTTCTCTTCTCATCTCGGGCGGTGATGACGGAACCATATCTGTGTTCCCGATCCTACGCCTCCTAGATTCCTCATCCAATGATAATTCCAGTCAGTTTGCATTGTATAGTTTCCCCGGACACGCTTCATCCGTGACCGCTATCGCCACCGGAATGGGTGGTTGCAACTCGACTATCATCTCATGCTCATTGGACTGCACATGTAAGTTGTGGAGCTTAGCACACGGTTCCCACCTGCGCACAGTGCGGTTCCCGTGCATGATTTGGGGTGTTGCAATGGATTCCACCGAGTCAGATTTCTATGCCGGTGGATCAGACGGTCGTGTATACGTTGGGGTTTTGAAGGTCAATAGAAGACAGCCCATGAGTAGTGATGCTGAAGTGGTGGCCTGGGTCCCGGAGCACGGTGGAGCGGTGACAGCAGTGGCAATGGCGAACCAGGGACGGAATCTGGTGTCGGCTTCAGAAGATGGGAGTGTTCGAGTTTGGGAGGTGGAGTGTGGTAGGGTGGTTAGGGTTCTTGGGCATGAGAGGGGAAGCATCAGTGACGTTGTGGTGGCAAAAGGGATTAGAGAGGGTAGTTGTTTCGGTGTCAGATTTGGAGGTGGTGGTGGTGGTGGTGGTAGTGGGTTTGAATGGGGAGGTCAAAGTTTAGGGTTTTCGGGTAGAGAGATAAGTAGGCCAGTGAGGGAGGTGGGTGAGATGGAAGATACGTTGAGTGTGGTGGCGAAGGATAGGAGGAGAGCTATTGATACGCTTGAAGCTGCAATTGGGACGTATGGGAGGCTCTTGGAACTCATACTCAAGGAAGCCAAGGGGGGCGGTACTAATAACAACAATACTGATGAAGAGGAAGCCGAGGGGTAG 1389 0.5263 MHTFSVTKDLVLNAVSNSTFPFFLFSQNNSACCMPTSHHKMASSSQEILLASSPDSPIAAYDASTGAILAYFTGSRSPRKGLALAGNTLIAASHIFSDTASGSVRLYNWWSSIAFHHLPVPEPVAPLAATPDGLYLFSGGLSGHIHALTLPSGDLLRSFPAHCKPVSCLTINDDASLLISGGDDGTISVFPILRLLDSSSNDNSSQFALYSFPGHASSVTAIATGMGGCNSTIISCSLDCTCKLWSLAHGSHLRTVRFPCMIWGVAMDSTESDFYAGGSDGRVYVGVLKVNRRQPMSSDAEVVAWVPEHGGAVTAVAMANQGRNLVSASEDGSVRVWEVECGRVVRVLGHERGSISDVVVAKGIREGSCFGVRFGGGGGGGGSGFEWGGQSLGFSGREISRPVREVGEMEDTLSVVAKDRRRAIDTLEAAIGTYGRLLELILKEAKGGGTNNNNTDEEEAEG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00024 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Eupl06g00024 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 255 IPR001680 GO:0005515
Eupl06g00024 462 SMART WD40_4 205 246 IPR001680 GO:0005515
Eupl06g00024 462 SMART WD40_4 152 191 IPR001680 GO:0005515
Eupl06g00024 462 SMART WD40_4 299 338 IPR001680 GO:0005515
Eupl06g00024 462 Gene3D - 288 365 IPR015943 GO:0005515
Eupl06g00024 462 PANTHER WD-REPEAT PROTEIN 18 46 362 IPR045227 -
Eupl06g00024 462 Pfam WD domain, G-beta repeat 209 246 IPR001680 GO:0005515
Eupl06g00024 462 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Eupl06g00024 462 Pfam WD domain, G-beta repeat 309 337 IPR001680 GO:0005515
Eupl06g00024 462 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Eupl06g00024 462 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Eupl06g00024 462 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Eupl06g00024 462 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Eupl06g00024 462 Gene3D - 7 287 IPR015943 GO:0005515
Eupl06g00024 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 190 IPR001680 GO:0005515
Eupl06g00024 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 340 - -
Eupl06g00024 462 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 44 355 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00024 Eupl-Chr6 839218 840855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00024 138 343 U-box Gene Family AT2G33340 25.701 1.10e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00024 K14829 - nnu:104587917 529.635