Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00019 ATGGAACGTGGAGGTTTCCATGGCTACCAGAGGCTCCAGAAATCAAGCTCCGAGACCTCCAACGACAACTCAGAGCGTGACAATATTGTGTGCAATGTGAGGGAGCAGGACCGATACATGCCGATCGCAAATGTGATTCGGATCATGCGGAAGATCCTCCCAACCCATGCCAAGATTGCTGATGACGCAAAGGAAACTATCCAGGAGTGCGTATCTGAGTACATAAGCTTCATTACCAGCGAGGCGAACGAGAGGTGCCAACGTGAGCAGCGAAAGACCATAACCGCTGATGATGTGATGTGGGCCATGGGCAAGCTCGGGTTTGACGACTACATTCAACCCCTAACTGTTTACATGCAACGCTACCGCGAGTTTGAGGGTGAGCGTGGCTCAATGCGGAGCGACATATTGGTGAAGCGGACTATGGATTTAGCCCCATTAGCTGCCGCAGGTTATGCACAAGGATTTCACATGGCCCATCACCAAGGGCTCTTCGGAGGAGCAATGGGCGGGTATTTAAGGGATGGGTCGAGCGCGAACCCGGCCCAGGTTGCAATGGCTAGCTTTGATCCTTATGCACCCTATAAATGA 591 0.5228 MERGGFHGYQRLQKSSSETSNDNSERDNIVCNVREQDRYMPIANVIRIMRKILPTHAKIADDAKETIQECVSEYISFITSEANERCQREQRKTITADDVMWAMGKLGFDDYIQPLTVYMQRYREFEGERGSMRSDILVKRTMDLAPLAAAGYAQGFHMAHHQGLFGGAMGGYLRDGSSANPAQVAMASFDPYAPYK* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00019 196 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Eupl06g00019 196 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Eupl06g00019 196 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Eupl06g00019 196 MobiDBLite consensus disorder prediction 10 27 - -
Eupl06g00019 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Eupl06g00019 196 Gene3D Histone, subunit A 29 143 IPR009072 GO:0046982
Eupl06g00019 196 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Eupl06g00019 196 FunFam Nuclear transcription factor Y subunit B-6 28 143 - -
Eupl06g00019 196 MobiDBLite consensus disorder prediction 1 28 - -
Eupl06g00019 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Eupl06g00019 196 SUPERFAMILY Histone-fold 36 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00019 Eupl-Chr6 747546 750182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00019 1 162 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.186 5.42e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl06g00019 CBFD_NFYB_HMF 4.2e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00019 K08065 - msin:131258141 291.967