Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00016 ATGAAACTCACTGACTTACCTGACGAAATCTCGCCCTTCCCCGATGCCGGAAACCTATTGTATGGTCATCGAACTTCTCCGAAAATCGAGTTTGGGTCACAGTTCCCGCTCCAGAAGCTCCGTCCGATCAGAAGCAACGGAGGAGATTTAGCAGACTATCCAGATTCTCCGGCCAATTTTGGTTCCGGAGAGTTGCCGGAAAATGGAAGTCTCGCCGGGAACCTACTGTACGGTCATCGTATGGCAGTCACTGCTTCCCCGAACATCGAATTACGGTCGCAAGTGATGCCGCTCCAGATTAAAGGGAGGGATGGAGACTCGATGGAGTGGTGTGATTCTCCGGCGAATGTTTATGACGAGGCCTTGCCGGAAAAAGGAGGTGGCGCCGGAAACCGGTGGCCTCAAGCAGAGACACTCACGCTGTTGAAAATTCGGTCGGAGATGGATGCTCAATTTAGAGATGCAAACCCTAAGGGACCTCTTTGGGAAATCGTTTCTAGGAAACTTGAACAACTGGGGTACCACAGAGACTCTAAAAAGTGTAAAGAGAAATTCAAAAACATTTACAAGTATTACAAGAGAAGTAAAGAAAGACTAGTGAGAGTGAGCCCTTATAAGTTCTTCAGCGAGCTCGTAGCTTTAGATAATCAGAACAATGGCAACTCAATTGCTGAAACTGGATTATCGGACAACACTAGAATCGCAACCCCTGACACTGTTGAAATCCCAAATCAACTGGTTAGTTTTCAGACCAGCTCAACTGATTTCTTGTCAGAATTCAGTTCTGATGATGATGAATTGAATGAGGACATTGAGGAACCTGTGAATCAGAAGAGAAAGAGGGAAACTGGTAAAAAATTTGAGATTTTCCTGGAGAATTTGATGAAGAAAGTGATGAAGAAACAAGAGGAGATGCATAAACAGTTGATGGAGATAATAGAGAAGAGGGAGAAGGATAGGATTATTAGAGAAGAAGCTTGGAAGCAGCAGGAGATGGAGAGGGTGAAAAGGGATAAGGAGATGAGAGCCCAAGAGACTTCTCGCAGCCTAGCTCTCATCTCCTTCATCGGAAACGTCTTGGGCCAGCAAATCCACATTCCACAATCTCCGGAACCCCCTTACCCTGACAAAGATCATGAAGAGAAACACGATCAGACTGAATATAAATTTGATTCAAGCAACCAAAGATGGCCGAAATCTGAAGTACAAGCTCTTATCACACTTCGAACCACAATGGAACATAAGTTTCGGAGTGTAGAAAAGAAGGGTCCTGTATGGGAAGAGATATCTCTTGCAATGTCTTCATTGGGTTATAGTCGGAGTGCGAAGAAGTGTAAAGAGAAATGGGAGAATATCAACAAATACTTCAAGAGAGCAATGGTGTGTGGCAAGAAGCGGCCAGAAAATACTAAGACGTGCCCATATTTCCGCGAATTGAATATCTTGTACAGAAATGGACTCATAAATCTGGGAAACACCCCTAATGAAACGAACGAAGTGGGTGACGACAATTGTTTATCAATGCCAAAGACCTTGAAGCCAGTGAAAGTTCATTCCGATAGCTCCCCAGAGTTCGATAATGTTATCCATTCATCTAATATCTGA 1605 0.4424 MKLTDLPDEISPFPDAGNLLYGHRTSPKIEFGSQFPLQKLRPIRSNGGDLADYPDSPANFGSGELPENGSLAGNLLYGHRMAVTASPNIELRSQVMPLQIKGRDGDSMEWCDSPANVYDEALPEKGGGAGNRWPQAETLTLLKIRSEMDAQFRDANPKGPLWEIVSRKLEQLGYHRDSKKCKEKFKNIYKYYKRSKERLVRVSPYKFFSELVALDNQNNGNSIAETGLSDNTRIATPDTVEIPNQLVSFQTSSTDFLSEFSSDDDELNEDIEEPVNQKRKRETGKKFEIFLENLMKKVMKKQEEMHKQLMEIIEKREKDRIIREEAWKQQEMERVKRDKEMRAQETSRSLALISFIGNVLGQQIHIPQSPEPPYPDKDHEEKHDQTEYKFDSSNQRWPKSEVQALITLRTTMEHKFRSVEKKGPVWEEISLAMSSLGYSRSAKKCKEKWENINKYFKRAMVCGKKRPENTKTCPYFRELNILYRNGLINLGNTPNETNEVGDDNCLSMPKTLKPVKVHSDSSPEFDNVIHSSNI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00016 534 SMART sant 393 455 IPR001005 -
Eupl06g00016 534 SMART sant 129 191 IPR001005 -
Eupl06g00016 534 Coils Coil 291 319 - -
Eupl06g00016 534 ProSiteProfiles Myb-like domain profile. 131 189 IPR001005 -
Eupl06g00016 534 PANTHER FI21293P1 124 498 - -
Eupl06g00016 534 CDD GT1 396 459 - -
Eupl06g00016 534 FunFam Trihelix transcription factor GT-2 133 194 - -
Eupl06g00016 534 MobiDBLite consensus disorder prediction 365 394 - -
Eupl06g00016 534 MobiDBLite consensus disorder prediction 372 390 - -
Eupl06g00016 534 Gene3D - 133 194 - -
Eupl06g00016 534 Gene3D - 397 458 - -
Eupl06g00016 534 Pfam Myb/SANT-like DNA-binding domain 395 480 IPR044822 -
Eupl06g00016 534 Pfam Myb/SANT-like DNA-binding domain 131 213 IPR044822 -
Eupl06g00016 534 ProSiteProfiles Myb-like domain profile. 389 453 IPR001005 -
Eupl06g00016 534 FunFam Trihelix transcription factor GT-2 397 458 - -
Eupl06g00016 534 CDD GT1 131 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00016 Eupl-Chr6 686541 689847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00016 124 483 Trihelix Transcription Factor Family AT1G76890 32.743 9.82e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl06g00016 Myb_DNA-bind_4 9.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00016 - - nnu:104587882 586.645