Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02420 ATGGAAACTTCCGGTAGCAATTTCGACCCATATAGGAATTCTACGGGCAATATTAATTCTAGAAGATACGGAATGCAGTTCTCTGCTGCAAATTTCATTCAGGCGCCTTTATCGGCTTTGTTAGAGTATTCTGGTATTCTTCGTACCAGGTCGAATCATCAAGAAACGGATGGTTTGATAAATAGAGGAGCGGCAGCTGGTTTCCGGGACCACATTCAGAGCCGGTTGGATGATTCTGCTGCGGGCAGCAGTGGTGGAGAGGTCTCCATTCGGATTATTGGTGCTGGAGAACAAGAGCACGTGAGGGTGGGAACCGGCCTTTCACCTTCATCAGTTGGTCAGGGTAGAGAAGGAAACCCTGGCGAGAATGGTGTCTCCACTGAGCAGGTTACTGGACCAGCTGCAGCAGCATCAGATCGTCAAGGAGACACAGGGAATGAAGGTGGGGCTACTGACGGGGTTTCCTTGTCATCATCAGTTTCGATCTCGGCTGTTAATTCAGGAAATGGGAGCACGGATGGGGAGGCTGTTAATGGTGTAGGAGGTAATAACAGGGATTCTTCTTACCAGAGATACGATATTCAGCAGGTCGCCAGGTGGATCGAGCAGATTCTACCATTTTCTTTGCTTCTCTTGGTTGTCTTCATTCGGCAGCATCTGCAAGGTTTCTTTGTCACGATTTGGATTGCTGCTGTGATGTTCAAGTCGAACGAGATTCTACGAAAGCAAACTGCTTTGAAGGGAGAGAGAAAAATTTCTGTTCTCACTGGGATCACTATAGTTTTCCTGCTTCATGTGGTTGGAGTGTACTGGTGGTATCGAAATGATGACCTTCTATACCCATTGGTCATGCTTCCACCAAAAGCAATACCACCTTTTTGGCATGCTATATTCATCATCATGGTGAACGATACAATGGTGCGGCAGGCAGCAATGGTTTTGAAGTGTATAATACTGATGTATTACAAGAATAGCAGAGGCCGTAATTATCGTAGGCAGGGTCAAATGCTAACTCTAGTTGAGTATCTGCTGCTGCTGTACCGTGCACTGTTACCAACTCCTGTCTGGTACCGCTTCTTCTTGAACAAAGAATATGGAAGCCTTTTTTCATCACTAACTACAGGGTTGTACCTCACTTTCAAGCTCACATCAGTTGTTGAGAAGGTACAATCCTTCTTTGCCGCATTAAAGGCATTATCACGTAAAGAGGTCCATTATGGGTCATATGCAACGTCTGAACAGGTTAATGCAGCAGGCGATCTATGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCCTACTTCGCTGTAAACATATCTTTTGTGAAGATTGTGTATCAGAATGGTTTGAGAGAGAACGGACATGCCCACTGTGCAGGGCCTTGGTTAAACCGGCAGACCTCAGATCGTTTGGTGATGGGTCAACCAGTCTGTTCTTTCAGTTATTCTAA 1452 0.4587 METSGSNFDPYRNSTGNINSRRYGMQFSAANFIQAPLSALLEYSGILRTRSNHQETDGLINRGAAAGFRDHIQSRLDDSAAGSSGGEVSIRIIGAGEQEHVRVGTGLSPSSVGQGREGNPGENGVSTEQVTGPAAAASDRQGDTGNEGGATDGVSLSSSVSISAVNSGNGSTDGEAVNGVGGNNRDSSYQRYDIQQVARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEILRKQTALKGERKISVLTGITIVFLLHVVGVYWWYRNDDLLYPLVMLPPKAIPPFWHAIFIIMVNDTMVRQAAMVLKCIILMYYKNSRGRNYRRQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02420 483 SUPERFAMILY RING/U-box 415 465 - -
Eupl05g02420 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 470 IPR013083 -
Eupl05g02420 483 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 20 483 IPR044235 GO:0061630|GO:1904294
Eupl05g02420 483 MobiDBLite consensus disorder prediction 100 153 - -
Eupl05g02420 483 Pfam Zinc finger, C3HC4 type (RING finger) 420 463 - -
Eupl05g02420 483 CDD RING-HC_RNFT1-like 420 460 - -
Eupl05g02420 483 ProSitePatterns Zinc finger RING-type signature. 437 446 IPR017907 -
Eupl05g02420 483 MobiDBLite consensus disorder prediction 104 134 - -
Eupl05g02420 483 ProSiteProfiles Zinc finger RING-type profile. 422 460 IPR001841 -
Eupl05g02420 483 SMART ring_2 422 459 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02420 Eupl-Chr5 52038520 52048805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02420 1 483 C3H Transcription Factor Family AT5G01960 65.496 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02420 - K22379 nnu:104612968 822.387