Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02411 ATGTCTGTCGTGCGAGTTTTGGTGTTTGGAGCTGTTCTGGCTGTGTGGCTGTGTTACTCGCCGCTACTTGTTGGAGCACAGATTCTTGATCCCGCAGAAGTCAGTGCATTACGAGCCATCAAGAGCAGTTTGAGTGATCCTATGAATAATCTGAGGAATTGGAATAAGGGGGATCCATGTACATCAAATTGGACTGGAGTTTTGTGCTTCAATGAGACAGGGAATGATGATGGATATCTACATGTCCGAGAACTGCAGTTGCTAAATATGAATCTCTCGGGAAGTTTATCACCTGAGCTTGGTCGATTATCTTATATGACAATATTGGATGTCATGTGGAACAAAATAAGCGGGAGTATACCAAATGAGATAGGCAATATTACATCTTTGGAGCTCCTACTCTTGAATGGAAACCAATTAACAGGTCCTTTACCTGAAGAGATTGGTTATCTTCCTAATTTGGACAGAATACAGATAGACCAGAACCATATATCAGGACAATTACCTAAATCATTTGCAAACTTGAACAAAACGAAGCACTTCCACATGAACAATAATTCAATTAGTGGGCAAATTCCACCTGAGCTTTCCAAATTACCAAGACTTGTTCACTTCTTGCTTGACAATAACAACATATCTGGGTATCTTCCACCAGAGTTCTCCGAAATGCCTAGCTTGCTTATACTTCAACTTGATAACAACCACTTTGATGGGACAATTCCAGCTTCTTATGGCAATATGTCAAAACTGTTGAAATTGAGTCTCAGGAACTGCAGCTTGCAAGGCCCAGTTCCCGACCTAAGCATGATACCAAACCTTGGCTATTTAGATCTCAGCTGGAACCAGCTTAATGGATCCATACCATCAGGAAAGCTTTCTGATAATATCACTACTATCGATCTGTCGTACAACAATCTTAACGGAGCTATTCCTACCAACTTTTCAGGTCTTCCTCTTCTCCAGAGATTGTCACTTGAGAACAATTCGTTAAGTGGCCTTGTTCCATCCACCATCTGGCAAAATAGGACTCTCAATGGAACTGAAAGCCTTGTGTTGGATTTCCAGAACAATGAGCTTTCAAATATTTCAGGCAGTCTTAACCCCCCTGCAAATGTCACCATCAGGCTTCAAGGGAATCCCGTATGCAACACTGCCAACCAACTCAACATAGTCCAGTTCTGTGAATCTCAGACTGAAGGGGATGCACCAGAGAGCTCAACTAACTCCACAGTTAATTGTCCTATTCAATCATGCCCTGTGGCAAATTACTTCGAATATGTCCCAGCATCTCCCTTGCCTTGTTTCTGTGCCGCGCCTCTTAGAGTGGGATATCGTTTGAAAAGTCCAGGATTCTCAGATTTTCGTCCATATGAAATCCCATTTGAGGTGTACCTAACCTCTGGTCTTGAATTGGATCTTTATCAGCTGTCCATTGTTTCATTTATGTGGGAAGAAGGCCCTCGGCTGGGGATGGACTTGAAGTTGTTTCCCAAGTCCGGTACTAACTCCAGTTCCTTTAATGATAGTGAAGTTCAACGAATCAGGAGCAAGTTCACAGGATGGACAATTCCTGACAGTGAAATTTTTGGGCCATATGAACTTATAAACTTCACTCTCTTGGGACCTTATGAACATGTGCTTCCCGACTATCCAAAATCGGGGATAAGCAAGGGTGCCCTGGCTGGCATTATATTAGGGGCCATCGCTGGTGTAGTTACATTATCTGCAATTATTTCAATTCTTATCATGAGAAGGCGTATGAAAAACTACAGTGCAGTTTCAAGAAAGCGTCACTTGTCGAAGATCCAAATCAAAATTGATGGTGTGAAAGATTTCACTTATGGAGAAATGGCATTGGCCACAAACAATTTCAATAGCTCCACTCAGGTTGGTCAAGGAGGCTATGGGAAGGTATATAAAGGTATTCTTGCCGACGGCACAGTTGTGGCCATAAAGCGTGCACAAGAGGGATCATTACAGGGAGGAAAAGAGTTCTACACAGAAATAGAATTGTTATCAAGGGTACATCATCGGAACTTGGTCTCTTTGGTTGGATATTGCGATGAAGAAGATGAACAGATGTTGGTTTATGAGTTCATGCCAAATGGCACACTGAGGGATCACCTTTCTGCTAAGTCAAAAGAACCTCCGAGTTTTGCTATGAGGTTGCGAATTGCATTGGGTTCGGCCAAGGGTATATTCTACCTCCATACTGAAGCAGATCCTCCAATATTCCACCGAGATGTCAAAGCCAGCAACATATTGTTGGACTCCAAATTTACTTCCAAGGTTGCTGACTTCGGACTTTCACGACTTGCTCCGATTGCGGATATGGAAGGGACTGTTCCTGGCCATGTATCCACAGTTGTTAAGGGCACCCCGGGCTACCTTGATCCAGAATACTTCTTAACTCATAAGTTGACCGACAAGAGTGATGTTTATAGCCTTGGAGTTGTATTTCTAGAGCTCTTAACGGGAATGCAGCCAATCTCCCATGGTAAAAACATTGTTCGAGAGGTGAATGTGGCCTATCAATCCGGTATGATCTTCTCGGTCATAGATGGACGCATGGGATCTTATCCTTCTGAATGTGTTGAGAAGTTTATCACATTGGCCCTCAGGTGTTGCCAAGATGAGACGGAGGCTCGACCATCAATGGCAGAAGTGGTCAGGGAATTGGAGAATATATGGCTTATGATGCCAGAATCTGATGACACAGCACCTGCAGAATCTATGGTCACTGATCCTAAAAAGGCAGTGACCCCACCAGCATCATCATCCTCAGAAATGAAGAACCCATATGTGTCATCAGACGTCTCCGGCAGTAATCTTGTCAGTGGAGTCATTCCCACCATTACGCCTAGATGA 2868 0.4334 MSVVRVLVFGAVLAVWLCYSPLLVGAQILDPAEVSALRAIKSSLSDPMNNLRNWNKGDPCTSNWTGVLCFNETGNDDGYLHVRELQLLNMNLSGSLSPELGRLSYMTILDVMWNKISGSIPNEIGNITSLELLLLNGNQLTGPLPEEIGYLPNLDRIQIDQNHISGQLPKSFANLNKTKHFHMNNNSISGQIPPELSKLPRLVHFLLDNNNISGYLPPEFSEMPSLLILQLDNNHFDGTIPASYGNMSKLLKLSLRNCSLQGPVPDLSMIPNLGYLDLSWNQLNGSIPSGKLSDNITTIDLSYNNLNGAIPTNFSGLPLLQRLSLENNSLSGLVPSTIWQNRTLNGTESLVLDFQNNELSNISGSLNPPANVTIRLQGNPVCNTANQLNIVQFCESQTEGDAPESSTNSTVNCPIQSCPVANYFEYVPASPLPCFCAAPLRVGYRLKSPGFSDFRPYEIPFEVYLTSGLELDLYQLSIVSFMWEEGPRLGMDLKLFPKSGTNSSSFNDSEVQRIRSKFTGWTIPDSEIFGPYELINFTLLGPYEHVLPDYPKSGISKGALAGIILGAIAGVVTLSAIISILIMRRRMKNYSAVSRKRHLSKIQIKIDGVKDFTYGEMALATNNFNSSTQVGQGGYGKVYKGILADGTVVAIKRAQEGSLQGGKEFYTEIELLSRVHHRNLVSLVGYCDEEDEQMLVYEFMPNGTLRDHLSAKSKEPPSFAMRLRIALGSAKGIFYLHTEADPPIFHRDVKASNILLDSKFTSKVADFGLSRLAPIADMEGTVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGMIFSVIDGRMGSYPSECVEKFITLALRCCQDETEARPSMAEVVRELENIWLMMPESDDTAPAESMVTDPKKAVTPPASSSSEMKNPYVSSDVSGSNLVSGVIPTITPR* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02411 955 SMART LRR_typ_2 317 340 IPR003591 -
Eupl05g02411 955 SMART LRR_typ_2 270 294 IPR003591 -
Eupl05g02411 955 SMART LRR_typ_2 127 151 IPR003591 -
Eupl05g02411 955 SMART LRR_typ_2 199 223 IPR003591 -
Eupl05g02411 955 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Eupl05g02411 955 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Eupl05g02411 955 Gene3D Transferase(Phosphotransferase) domain 1 700 909 - -
Eupl05g02411 955 PANTHER RECEPTOR-LIKE PROTEIN 55 40 896 - -
Eupl05g02411 955 Pfam Protein kinase domain 625 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02411 955 Gene3D Ribonuclease Inhibitor 188 293 IPR032675 -
Eupl05g02411 955 Pfam Leucine rich repeat 295 342 IPR001611 GO:0005515
Eupl05g02411 955 SMART serkin_6 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02411 955 Gene3D Ribonuclease Inhibitor 294 385 IPR032675 -
Eupl05g02411 955 ProSiteProfiles Protein kinase domain profile. 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02411 955 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 191 292 - -
Eupl05g02411 955 MobiDBLite consensus disorder prediction 905 940 - -
Eupl05g02411 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Eupl05g02411 955 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 31 190 - -
Eupl05g02411 955 MobiDBLite consensus disorder prediction 920 940 - -
Eupl05g02411 955 SUPERFAMILY Protein kinase-like (PK-like) 610 920 IPR011009 -
Eupl05g02411 955 Gene3D Phosphorylase Kinase; domain 1 594 699 - -
Eupl05g02411 955 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 700 909 - -
Eupl05g02411 955 SUPERFAMILY L domain-like 41 386 - -
Eupl05g02411 955 CDD STKc_IRAK 630 896 - -
Eupl05g02411 955 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Eupl05g02411 955 FunFam Leucine-rich repeat protein kinase family protein 588 699 - -
Eupl05g02411 955 CDD JMTM_APP_like 551 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02411 Eupl-Chr5 51864878 51886642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02411 12 904 Receptor kinase-like Gene Family AT5G01950 61.650 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Eupl05g02411 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02411 - - msin:131223798 1471.83