LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g02410	ATGTCTGGTGTCAGAGTTTGTGTAATCGGACCTGTTCTGGCATTATGTTGCTTCTCGCTACTTGTGGCAGCACAGCTACTTGATCCATCCGAAGTCGCCGCGTTGCGCGCTATCCGTCACAGTTTAATTGATCCTCTGGAGATTCTTACTAGTTGGAATGAGGGAGATCCATGTAAATCGAGCTGGATTGGAGTTTTCTGCAACACTATAATAGGGAGTGATGGGTACCTACATGTTAAAGAATTGCAGATGATAAATATGAATCTCTCTGGAAGTTTAGCTCCTGAGCTTGGGCAACTATCTGAGATGAAAATATTAGATTTCATGTGGAACAACATAAGTGGCAATATACCGAAGGAGATAGGCAATATTACGTCTTTGGAACTCCTGGTCTTGAATGGAAACCAACTATCAGGCTCTTTACCAGATGAGATTGGTTATCTTTTTAACTTAAATAGACTCCAAATAGACCAGAACCATATATCAGGACCAATACCAAAATCATTTGCCAACTTGAACAAGATTAAACACTTCCACATGAACAATAATTCCATCAGTGGCCAACTTCCCCCGGAGCTTTCTACATTACAAAGCCTTGTTCACTTCCTTGTGGACAGTAACAACTTATCTGGGTATCTTCCACCAGAGTTTTCTGACATCCCCAACTTGCGCATACTTCAACTTGATAATAACCGCTTTGATGGGAGTGAAATTCCAGCTTCTTATGGCAACATGTCGAAACTGTGGAAATTGAGTCTTAGGAATAGCGGTTTGCAAGGAGGTGTTCCTGATTTTAGCAGGATTGCAAGCCTTCACTATTTAGATCTTAGCCGGAATCAGCTCACTGGATCCATACCATCAAACAAGCTTTCCGATAATATCACTACTATCAATCTGTCAAACAACAATCTTAATGGATCTATCCCCTCCAATTTCTCCCGTCTTCCTAATCTGCAGAGATTGTCACTAGAGAACAATCTGCTGAGTGGTTCTGTTCCTTACTCCATTTGGCATAATATGACGTTTAGTGCAACTTCAAGACTTACCTTGGATTTCCAGAACAATTCACTCTCGGATATTTCAGGTGGTCTTAATCTTCCTGCAAACATCACTCTGAGGCTTCAAGGGAATCCTGTTTGTACCAATGCCAACCAACTCAATCTAATACAGTTCTGCGGATCTGAAACTGGAGGCAATGATGCATCTGGAAGCTCAACCAACTCTTCTATTGATTGTCTTATTCAGTCATGTCCTGTGGAAAATTTCTTTGAATATGTGCCAGCATCTCCGGTTCAATGCTTTTGCGCCGCCCCTCTAAGAGTTGGATATCGGTTAAAAAGTCCTTGCATTTCAGATTTTCCTCCATATAAAGAGTCATTTGAGGTGTACCTAACCACTGCTCTCAACTTGTCTCTTTATCAGTTATTCATCGACTCATTCATCTGGGAAGAAGGTCCTAGGCTAAGGATGCATTTGAAGTTTTTTCCTTTGTATGATAGTCGTACTAATACATTTAATAAAAGTGAGGTTCAACGAATTAGACAGATGTTTACTTCATGGATGCTTGCTGGTAATGATACCTTTGGACCATCTGAGCTGCTCAACTTCACTCTCACGGGACCTTATTCAAATCTGATTCTCGAGTCTCCAAAGTCGAGGATAAGCAAGGCTGCTATAGCTGGCATTGTATTGGGGGCCATTGCTTGTGCAATTGCAACATCTTCTTTCGTTGCAATTCTTATCAGGAGAAGACATTCTAGATTTGGACATACTATTTCAGGAAAACATTTACTGCCAAAAATCCCTATTAGAATTGAAGGTCTGAAAGGCTTCGGTTTTGGGGAAATGGCAATTGCAACGGCTAGTTTCAACAACTCTACTCAAATTGGCCAAGGCGGGTATGGGAAGGTCTATAAAGGCATTCTAGCTGATGGGACAATTGTAGCCATAAAGCGTGCACAAGAAGGATCCTTACAGGGTCAAAAAGAATTCTCCACAGAGATAGAATTGTTGTCAAGGATACATCATCGAAATCTGGTCTCTCTAGTTGGATATTGCGTTGAAGAAGGGGAACAGATGTTGATTTATGAGTACATGGCTAATGGCTCATTGCAGGATCACCTTTCCGGTAAATCAAAAGAACCCCTCAGTTTTGCTATGAGATTGCGCATTGCATTGGATTCGGCAAAGGGTATCCTGTACCTCCATACAGAAGCAGACCCACCTATATTCCATCGAGATATCAAATCCAACAATATATTGTTAGACTCCAAACTTACTGCTAAAGTTGCTGATTTTGGACTTTCACGGCTTGCACCAGTTCCAGATGGTGAAGGGAAAGTGCCTGGTCATGTATCCACCGTTGTGAAGGGCACACCTGGCTACCTGGATCCAGAATACTTTTTGACCAACAAGTTGACAGACAAGAGCGATGTCTATAGCCTTGGAATTGTATTTCTAGAGCTCTTGACAGGGATGCGGCCGATATCGCATGGTAAAAACATCGTCCGAGAGGTGAATATGGCGTATCAGTCTGGTAAGATGTTCTCAGTTGTAGACAGACGCATGGGCTCTTACCCTTCGGAATGCGTTGAGAAATTCATGGCAATGGCTCTTAGGTGTTGCAAAGATGAGATGGAAGCGCGACCTTCGATGTCGGAAGTGGTCAGGGAGCTAGATAAGATGCAAAATATGATAGAGGAATCCAACCCCGAATCATCTGGATCTTTTGCCAATTATCCTGGAAAATCGATCACACCGTCATCGTCAACCAATACAACAAGGAACCCATACGTGTCTTCTGATGTTTCAGGGAGTGATCTCGTCAGTGGTGTCTTTCCCAGTATAATCCCACGCTGA	2859	0.4236	MSGVRVCVIGPVLALCCFSLLVAAQLLDPSEVAALRAIRHSLIDPLEILTSWNEGDPCKSSWIGVFCNTIIGSDGYLHVKELQMINMNLSGSLAPELGQLSEMKILDFMWNNISGNIPKEIGNITSLELLVLNGNQLSGSLPDEIGYLFNLNRLQIDQNHISGPIPKSFANLNKIKHFHMNNNSISGQLPPELSTLQSLVHFLVDSNNLSGYLPPEFSDIPNLRILQLDNNRFDGSEIPASYGNMSKLWKLSLRNSGLQGGVPDFSRIASLHYLDLSRNQLTGSIPSNKLSDNITTINLSNNNLNGSIPSNFSRLPNLQRLSLENNLLSGSVPYSIWHNMTFSATSRLTLDFQNNSLSDISGGLNLPANITLRLQGNPVCTNANQLNLIQFCGSETGGNDASGSSTNSSIDCLIQSCPVENFFEYVPASPVQCFCAAPLRVGYRLKSPCISDFPPYKESFEVYLTTALNLSLYQLFIDSFIWEEGPRLRMHLKFFPLYDSRTNTFNKSEVQRIRQMFTSWMLAGNDTFGPSELLNFTLTGPYSNLILESPKSRISKAAIAGIVLGAIACAIATSSFVAILIRRRHSRFGHTISGKHLLPKIPIRIEGLKGFGFGEMAIATASFNNSTQIGQGGYGKVYKGILADGTIVAIKRAQEGSLQGQKEFSTEIELLSRIHHRNLVSLVGYCVEEGEQMLIYEYMANGSLQDHLSGKSKEPLSFAMRLRIALDSAKGILYLHTEADPPIFHRDIKSNNILLDSKLTAKVADFGLSRLAPVPDGEGKVPGHVSTVVKGTPGYLDPEYFLTNKLTDKSDVYSLGIVFLELLTGMRPISHGKNIVREVNMAYQSGKMFSVVDRRMGSYPSECVEKFMAMALRCCKDEMEARPSMSEVVRELDKMQNMIEESNPESSGSFANYPGKSITPSSSTNTTRNPYVSSDVSGSDLVSGVFPSIIPR*	953

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g02410	952	SUPERFAMILY	L domain-like	39	389	-	-
	Eupl05g02410	952	Gene3D	Ribonuclease Inhibitor	190	287	IPR032675	-
	Eupl05g02410	952	Gene3D	Ribonuclease Inhibitor	288	406	IPR032675	-
	Eupl05g02410	952	CDD	STKc_IRAK	629	895	-	-
	Eupl05g02410	952	Gene3D	Transferase(Phosphotransferase) domain 1	699	912	-	-
	Eupl05g02410	952	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	699	908	-	-
	Eupl05g02410	952	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Eupl05g02410	952	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	29	190	-	-
	Eupl05g02410	952	FunFam	Leucine-rich repeat protein kinase family protein	593	698	-	-
	Eupl05g02410	952	Gene3D	Ribonuclease Inhibitor	29	189	IPR032675	-
	Eupl05g02410	952	ProSiteProfiles	Protein kinase domain profile.	623	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl05g02410	952	MobiDBLite	consensus disorder prediction	899	936	-	-
	Eupl05g02410	952	Pfam	Protein tyrosine and serine/threonine kinase	626	892	IPR001245	GO:0004672\|GO:0006468
	Eupl05g02410	952	Gene3D	Phosphorylase Kinase; domain 1	599	698	-	-
	Eupl05g02410	952	PANTHER	RECEPTOR-LIKE PROTEIN 55	41	898	-	-
	Eupl05g02410	952	ProSitePatterns	Protein kinases ATP-binding region signature.	629	651	IPR017441	GO:0005524
	Eupl05g02410	952	SMART	serkin_6	623	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl05g02410	952	SUPERFAMILY	Protein kinase-like (PK-like)	610	916	IPR011009	-
	Eupl05g02410	952	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	743	755	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g02410	Eupl-Chr5	51760146	51854155	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g02410	5	952	Receptor kinase-like Gene Family	AT5G01950	59.034	0.0	1078

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Eupl05g02410		PK_Tyr_Ser-Thr	1.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g02410	-		-	msin:131223798	1336.63