Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02398 ATGCTTGTCCCTGAGCGTTTTGATGCCGCAGACGAAACTCCTTTCTATCCGTTTGATCCGCGATCTTGCATGATTAATCCGATGGACAGTATAGACCGGAACTCTTTCTTCGAGAAAGCCTCCGGCAAGCCAGTCTCGACAGCGATAAAGTTCTCCGAGCACGTTCTCAAAACGACAAAACTTATTCATGGCCGGAAGTCCGACGGAAAATCCATGAATTCCGACGAGTATCTGCCAGGAACGAGAAGAATACGGCAGAAGGTTGTGAGGATCGTATTCACCGACATGGAGGCTACCGACTCGTCTAGCGATGATGAGGGAGAGTTTGTACGAAGAGTTAAGAGACACGTCAGAGAAATCGATATCGAGGTACCTGCTAAAGTACGCCGAGAGGTATCAAGGAAGAAGAGAAGATTCCGAGTGCCGGAATCTGACGAAAATCGCGGGCAAAGGTTCAGAGGCGTAAGGCAGAGACCGTGGGGCCGTTGGGCGGCAGAGATACGAGACCCAATACGTCATAAACGGTTGTGGCTCGGAACGTACGATACGCCGGAAGAAGCGGCTACCGTTTACGATAACGCTGCCGTTAAGTTAAAGGGCCCGAACGCCGTTACTAACTTTCCTGCTCTTGCTAGGACGGAAACAGTCGTTAACAGCGAAAGAGACGGCGATGACTTCGCCAAGACTGCTTCCTCCCCCACTTCAGTCCTCCGTTACGACGACTTAATGCCATTCGATAATTTCTGTTACGATAATGTTGACACATTCGGGTTTAACATCGACTTGCCGTTAACGCTTCCGGATATCGAATGGCCAAAAAATTACTGTTGCGAGGAAGAGTTCAGCGAGTTTGACGTGGACTGTTTCTCAGTGGAAGTGTTCAGATTCTAA 891 0.4938 MLVPERFDAADETPFYPFDPRSCMINPMDSIDRNSFFEKASGKPVSTAIKFSEHVLKTTKLIHGRKSDGKSMNSDEYLPGTRRIRQKVVRIVFTDMEATDSSSDDEGEFVRRVKRHVREIDIEVPAKVRREVSRKKRRFRVPESDENRGQRFRGVRQRPWGRWAAEIRDPIRHKRLWLGTYDTPEEAATVYDNAAVKLKGPNAVTNFPALARTETVVNSERDGDDFAKTASSPTSVLRYDDLMPFDNFCYDNVDTFGFNIDLPLTLPDIEWPKNYCCEEEFSEFDVDCFSVEVFRF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02398 296 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 85 238 - -
Eupl05g02398 296 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Eupl05g02398 296 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Eupl05g02398 296 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Eupl05g02398 296 FunFam Ethylene-responsive transcription factor 2 150 209 - -
Eupl05g02398 296 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Eupl05g02398 296 Pfam AP2 domain 151 200 IPR001471 GO:0003700|GO:0006355
Eupl05g02398 296 Gene3D AP2/ERF domain 150 209 IPR036955 GO:0003700|GO:0006355
Eupl05g02398 296 CDD AP2 150 210 IPR001471 GO:0003700|GO:0006355
Eupl05g02398 296 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02398 Eupl-Chr5 51604313 51606645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02398 49 239 AP2-EREBP Transcription Factor Family AT4G27950 41.395 4.99e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl05g02398 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02398 K13434 - nnu:104588365 293.123