Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02385 ATGGGTAGAAGGAAACAGGCCAGACCGCATAGGTCGGGAGGGATATTAGAGAACATTGTTAGTTCTGAGGGAAATGTAGGGAACCTTAATAGTGGTGAAGCCTTAGATGCAAACAATAAAGAAGAAATTGGTGATTCTAGTAAACCCTTTTTTGTGGAAGTCGATTGGACTTGTTGGACTTCGGATGAGCATCTTGATATTGCGGAAGTTGTTGTCACAGATTCAAGGTTCAGAGAAGGGTTTTCTGGTTACAGATTGACTGAGGATAGTTATCGAGATCCCAAGTTTGCTCTTCGGTTTCGGTTGCTTAATGTAGAGGAGTTTGGGGGTTGTCTTAGGTTGGGTCATTGGCCTGTGATCTCCACTGATTGTATCTTTTTGGAGTTCTTAGAGACATGTAGGTTGGAGGATAAGGAGGCGGAATCTGTAATTTTTTCTGGGATTTTTGATGGTTCAGATGAGGGTGTTTCTGGTCTTGTTCATTTGGTTAGCCAGAAGGTTATGATGGTGAGGCCAGTTACGGAAATTAGAGTTTCGGAGGATGTTACATCTCTTAGGGTGAGGGTTGAGATACTTAAGAGTGCTTTTGATGCATGCGGGTCACTTTTGGAGAACACTAGGCAACTATGGAAAAAGAGTATGCTGAGTGTCATGGCTTGGTTGCGACCTGAAGTTACAACCCAGGAGGCTAGGTATGGAATTAATAAATCAGAGATTGTGGAACTTGATACACATACGGAGACGAAAGGCAGCAGCTTTGTGTCAAGAAAGCGCGCTAGGTTTGATGCTGCTGGGTTCTACGAAGCCATCAAGCCATCCAAAGGGGAGCCTACGCTGGATGATGAACTTCCTGACTTACTTCCTGAACTGAAACCATACCAACGCCGTGCATCATATTGGATGGTTCAGAGGGAGAAAGGGGCTTCTGGGAGTTTGGATGAAATGGATCAAAATCAATTCTATAGGCCTCTCTGTATGCCTGTGGATTTCCTCGACACACATTCAAGAATGTTCTATAATCCATTCAGTGGAAATATTTCGTTGCATCCAGAATCATCATCATCATCATATGTGTCTGGTGGGATTCTTGCGGATGAGATGGGTCTGGGGAAAACCGTTGAACTGCTTGCTTGCATCTTTGCTCATCATAAGTCAACATCTGAGGGTGACATCATTTTTGACAATGAAATGCAAGTTACCGAAAGTCAGAGGAGTAATTTGAAAAGATTAAAAAGAGAACGCGTTGAGTGTATATGCGGGGCAGTGAGTGAGAGCCCCAAATATAAAGGATTATGGGTACAGTGTGATATATGTGATGCTTGGCAACATGCAGATTGTGTCGGTTACTCACCCGGAGGAAAAGCTTTAGACACCCAAGAAGTTTCCAAGGGAAGAGGCCGTAAAAAGGATCCATCTGTAAAGTTACGGAATCACTTGAAAAAGAAAGATGCTAGCAACATAGTTGAAATGAATGGGAATCATATTTGCCAGCCATGCTCAGAACTGATCCAAGTTACTTACTCTCCAATTACTAGTGGCGCGACTCTTATAGTGTGTCCGGCTCCCATATTACACCAATGGCATGCTGAAATCATTCGTCATACAAAACCAGGTTCTCTCAAAACTTGTGTTTATGAAGGCGTAAGAAATGCTTCGCTTTCAGCTACATCTACTACGGACATTAGCGAACTAGTCAATGCTGATATTGTTCTGACAACATATGATGTCCTGAAAGAAGACCTGTCTCACGATTCGGATAGGCATGAAGGAGATCGCCGCTTCATGAGATTCCAGAAGAGGTACCCAGTTATTCCAACTCTGCTCACAAGAATATTCTGGTGGAGGATTTGTTTGGATGAGGCCCAAATGGTGGAGAGTAATGTGGCTGCTGCAACAGAAATGGCGCTGCGGCTGCATGGCAAGCACCGTTGGTGCATTACAGGGACTCCCATACAGCGTAGGCTTGATGACCTGTATGGGCTTTTGAGATTCCTTAATGCAAGTCCTTTCGATGTCCATAGGTGGTGGGTTGAAGTTATTAGAGACCCATACGAGAGGAGGGATATGGGAGCTATGGAATTTGCACATAGGTTCTTTAAGCAAATCATGTGGCGTTCATCCAAAGTACATGTGGCAGATGAGTTACAGCTGCCTCCACAGGAGGAGTGCGTGTCCTGGCTCATTTTCTCACCAATCGAGGCACACTTTTACCAGAGGCAACACGAAACATGTGTGAGTTATGCCGGTGAAGTTATTGAAAGTTTTAAAGATGATATTCATAAGAGGAATGTACAAGGTTCTGAATCATCTGATGCTTCATGTGATCTTTTTCTTACCCATAACGAGGCTGCGAAACTGTTGCATTCACTCTTGAAGCTTCGCCAAGCCTGCTGTCATCCTCAAGTAGGGAGTTCTGGGTTGCGTGCTATGCAACAGTCTCCTATGACTATGGATGAGATACTGGGGGTTCTTGTAGGTAAAACCAAGATAGAAGGGGAGGAAGCTCTAAGGAAATTAGTTGTTGCATTGAATGGGCTGGCAGGGATAGCTGTAATTGAGCAAGATCTCTCTCGAGCTGTGTCACTGTACAGAGAAGCACTAACTTTAGCTGAAGAGCACGCCGATGATTTCCGCTTGGACCCTTTGTTGAATCTTCACATTCATCATAATCTGGCTGAGATACTTTCATCACAATGCCAGTCAATGGGAGGACAATTCCCTGAAAACCCTGTAGAGAAGGCCTCCAATTTGTTCGGAGTTGATGAGTTTGATCAGGACTCTGTGAAGAGACAAAAGATAAGCAAGGACAGCTCTTCAGATGTAACTATCGATGATGGGCATCTAGAGCATCAAGAGAAACTATCTGATTTTACCTCTGACCTATCAGCAGTTGGTGTAGAATGGGACAAAGGTACGGATGCCCAGTCCCAAGTATCATCTGGAGCCTTTAGTCATGGTTGCTTGAGAATGGCATGTGAAAATATTAAACAGAAGTACTTGTCTGTGTTCATTTCCAAGTTGTCCTCGGCTCAGCAAGAGTTCAGAAATTCATATATGCAGGTGTGTAATGCATTTAGTGACCGAAAAAATCAGCATATAAGTTGGTGGTTGGAAGCCCTTCATCGTATAGATCAGAATAAGGACTCCTCAAATGAGTTGATCAGAAAAGTCGGTGAGGCTGTGTCTGGAACTTTAAACAGTTCCAAGTCATCTAGAATTGCTTCAAGGTTCCGAAGTATAAGCGGTCTAAAGTATCTAATCCAAACTGGTCTGGATTCATTGGAAACCTCTAGACAAGCGTTACTTGAAAGGCTTTTGGAAATTGACCAGACAATGGAAAAACCAAGAGATGAGGATATTGTACATGTGAGATACTGTCGAAATTGCCAAGATAATGGTGACGGTCCTATTTGTGTTCTCTGTGAACTAGACGAGTTATTTCAGGGATATGAGGCTAGGCTTTTTCGTCTTACAAAAGGAGGTGACGGAGGGATGATTGCGTCTGCTGAGGAGGCAGTAGACTTGCAAAAGAAGAGATCTGCATTGAATCGTTTCTATTGGGCTTTATCAGATCCCAATAAAGGTTCATCTTCATCCAATGTTGACAATGAAGAGAATAAAAAACAGAGAGATGTCAGGGCAAAAGTAGTGGTTTCAAGATCTCCTTCTGAATTGGAGGTTGTCCTTGGGGTCATAAAGAGTTTTTCCAAAGCTCAGTTAGGAAGAGTGGACATATCAGCTGCTACCAAGCAACTATTTCTTTTTGAGGCTATGCGGAAGGAGTATGCCCAAGCAAGGTCTTTGGCAAATGCTCAAGCTCAAACTCTGCGTGCCCATGATGAGATTAAGATGGCAACCTCACGATTGCGCCTAAGAGAAACCAATAATGACACTTCTGTCGATGCGTTGTGTTCAGAAGAATTAATTACAGCTAGTGTGCAGTTCTCCAGTGAAAAATTCATGTCTTTGTCCTTATTATCACGTATAAAAGGACAACTTCGTTACTTGAAGGGACTGGTTCTTTCTAAACAAAAAGCACAATTGGACAGCCCTAATTCATCTATGCATCAAGATACGGATACTTCATCAGCTGCTTCTCTTCATACAGGAGAGCAAAGTGAATTCATGGGTAAAGCAGATGATGAAACCTGCCCAGTTTGTCATGAAAAGCTCAGCAACCAGAAGATGGTATTTCAGTGTGGGCATGTTACGTGCTGTAAATGTTTGGTTGCAATGACTGAACAGAGATTATCTCCTCATGGAAAGTCTCGATATAAATGGGTGATGTGCCCAACATGTCGACAACATACAGATTTTGGGAATATCGCTTATGCCGATGATAGTCAAGACCAAGCCTGTAATTCTGGTATACCAAGTACATTCAAAGGTCATGAAAAGCTGGAAGCTTCTATAAATGTTCAAGGTTCTTATGGAACAAAGATTGAAGCAGTCACGAGGAGAATCCTGTGGATCAGATCTACCGACCCAAAAGCAAAAGTTCTCGTCTTCTCAAGTTGGAACGATGTTCTTGATGTGTTGGGACATGCTTTGTTTGCTAACGACATCAGCTATATCCGGATGAAAGGAGGCAGGAAATCACATGTTGCAATCACACAGTTCAAAGGACAGAAAAGCAGTGCAAAAGGAACTGGCAAGATAAATGACCAGCAACAAGAGCCAAAATCCGTTCAAGTGCTATTGCTCTTGATCCAACATGGAGCCAATGGTCTTAATCTCTTAGAAGCACAGCATGTTGTTCTTATAGAGCCACTTCTCAATCCTGCAGCAGAAGCACAAGCAATCAACCGGGTTCACCGAATTGGACAGGACAAGATGACACTCGTTCATCGTTTTATAGTAAAAGATACTGTTGAAGAAAGCATCGATAAATTGAATAGAAGCAGGACCACCAATTCAATCCTAAGTGGAAACACCAAGAATCAAGATCAGCCGGTTCTGACACTCAAAGATGTAGAGTCCTTATTCTCTTCAACAGTGCCTGCCATGCCACCGGAAAATGAGAACCCAAGCAGAAGATTAATGCATTTACCTCCTGCTGTCGCTGCTGCTCTAGCTGCTGAGAGGAGGTGGAAGGAGAGTTTTGTATGA 5109 0.4314 MGRRKQARPHRSGGILENIVSSEGNVGNLNSGEALDANNKEEIGDSSKPFFVEVDWTCWTSDEHLDIAEVVVTDSRFREGFSGYRLTEDSYRDPKFALRFRLLNVEEFGGCLRLGHWPVISTDCIFLEFLETCRLEDKEAESVIFSGIFDGSDEGVSGLVHLVSQKVMMVRPVTEIRVSEDVTSLRVRVEILKSAFDACGSLLENTRQLWKKSMLSVMAWLRPEVTTQEARYGINKSEIVELDTHTETKGSSFVSRKRARFDAAGFYEAIKPSKGEPTLDDELPDLLPELKPYQRRASYWMVQREKGASGSLDEMDQNQFYRPLCMPVDFLDTHSRMFYNPFSGNISLHPESSSSSYVSGGILADEMGLGKTVELLACIFAHHKSTSEGDIIFDNEMQVTESQRSNLKRLKRERVECICGAVSESPKYKGLWVQCDICDAWQHADCVGYSPGGKALDTQEVSKGRGRKKDPSVKLRNHLKKKDASNIVEMNGNHICQPCSELIQVTYSPITSGATLIVCPAPILHQWHAEIIRHTKPGSLKTCVYEGVRNASLSATSTTDISELVNADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNVAAATEMALRLHGKHRWCITGTPIQRRLDDLYGLLRFLNASPFDVHRWWVEVIRDPYERRDMGAMEFAHRFFKQIMWRSSKVHVADELQLPPQEECVSWLIFSPIEAHFYQRQHETCVSYAGEVIESFKDDIHKRNVQGSESSDASCDLFLTHNEAAKLLHSLLKLRQACCHPQVGSSGLRAMQQSPMTMDEILGVLVGKTKIEGEEALRKLVVALNGLAGIAVIEQDLSRAVSLYREALTLAEEHADDFRLDPLLNLHIHHNLAEILSSQCQSMGGQFPENPVEKASNLFGVDEFDQDSVKRQKISKDSSSDVTIDDGHLEHQEKLSDFTSDLSAVGVEWDKGTDAQSQVSSGAFSHGCLRMACENIKQKYLSVFISKLSSAQQEFRNSYMQVCNAFSDRKNQHISWWLEALHRIDQNKDSSNELIRKVGEAVSGTLNSSKSSRIASRFRSISGLKYLIQTGLDSLETSRQALLERLLEIDQTMEKPRDEDIVHVRYCRNCQDNGDGPICVLCELDELFQGYEARLFRLTKGGDGGMIASAEEAVDLQKKRSALNRFYWALSDPNKGSSSSNVDNEENKKQRDVRAKVVVSRSPSELEVVLGVIKSFSKAQLGRVDISAATKQLFLFEAMRKEYAQARSLANAQAQTLRAHDEIKMATSRLRLRETNNDTSVDALCSEELITASVQFSSEKFMSLSLLSRIKGQLRYLKGLVLSKQKAQLDSPNSSMHQDTDTSSAASLHTGEQSEFMGKADDETCPVCHEKLSNQKMVFQCGHVTCCKCLVAMTEQRLSPHGKSRYKWVMCPTCRQHTDFGNIAYADDSQDQACNSGIPSTFKGHEKLEASINVQGSYGTKIEAVTRRILWIRSTDPKAKVLVFSSWNDVLDVLGHALFANDISYIRMKGGRKSHVAITQFKGQKSSAKGTGKINDQQQEPKSVQVLLLLIQHGANGLNLLEAQHVVLIEPLLNPAAEAQAINRVHRIGQDKMTLVHRFIVKDTVEESIDKLNRSRTTNSILSGNTKNQDQPVLTLKDVESLFSSTVPAMPPENENPSRRLMHLPPAVAAALAAERRWKESFV* 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02385 1702 SMART helicmild6 1511 1608 IPR001650 -
Eupl05g02385 1702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 484 668 IPR014001 -
Eupl05g02385 1702 Gene3D - 497 728 IPR038718 -
Eupl05g02385 1702 Pfam SNF2-related domain 293 802 IPR000330 GO:0005524|GO:0140658
Eupl05g02385 1702 SMART ultradead3 286 675 IPR014001 -
Eupl05g02385 1702 MobiDBLite consensus disorder prediction 1192 1213 - -
Eupl05g02385 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 460 IPR013083 -
Eupl05g02385 1702 Gene3D - 346 398 IPR038718 -
Eupl05g02385 1702 Gene3D - 1457 1666 IPR027417 -
Eupl05g02385 1702 SMART PHD_3 416 500 IPR001965 -
Eupl05g02385 1702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 1662 IPR027417 -
Eupl05g02385 1702 SUPERFAMILY FYVE/PHD zinc finger 412 451 IPR011011 -
Eupl05g02385 1702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 701 IPR027417 -
Eupl05g02385 1702 CDD DEXQc_SHPRH 290 706 - -
Eupl05g02385 1702 SUPERFAMILY RING/U-box 1379 1438 - -
Eupl05g02385 1702 CDD SF2_C_SNF 1477 1619 - -
Eupl05g02385 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1369 1452 IPR013083 -
Eupl05g02385 1702 ProSiteProfiles Zinc finger RING-type profile. 1384 1434 IPR001841 -
Eupl05g02385 1702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1483 1659 IPR001650 -
Eupl05g02385 1702 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1698 - -
Eupl05g02385 1702 MobiDBLite consensus disorder prediction 1347 1367 - -
Eupl05g02385 1702 SMART ring_2 1384 1433 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02385 Eupl-Chr5 51364510 51414796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02385 508 800 RAD5 or RAD16-like Gene Family AT5G22750 32.450 2.16e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl05g02385 SNF2_N 1.1e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02385 K15710 - nnu:104594462 2471.04