Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02383 ATGGAGAAAGAGCTCCTCGAGCTGTTCGAATCCGCGAAGAAGGCAGCGGAAGCTGCGGCAGCAGATGGAGCTCCGTCTGATGGATCGGAGGAATCTCGGTGCGTCGACGCATTGAAGCAGCTGAAGAAATTTCCAGTGACGATGCAAGTTCTTGTCGAGACGCAGGTTGGGAAACATCTTCGACCTCTCACAAAACATCCTAGGGAGAGGATTCAGGCTGTGGCTTCTGACTTGCTTGAAATATGGAAAAGGATAGTGCTGGAGGAAACTGCCAGAAATAAGAAAAATGGAAGCTCGGAAATAAAAAGTTCTGCAAAGGTTGAGGTTGCTAGGGCAGAGACGGTCAAGGTTGAGAAGGTCCAAAGGTCAAACTCTGCAAAGTTTGAGAAGGTTTCAAAGGCTGAAACCATCAAAGTTGAGAAAACTGATCAGAAATCTGAGAAGTTTTCATGGTCAGAAACTGTCAAAGTTGAGAAGAAGTTTGAAAATGCTGAGACCATCAGGGTTGAGAAGATTGGTGGGGGTGAGTCCGTGAAGGTTGAAAAGATAACAAAAGAAGAGAAGCAAGCTTCTGGTATTAGGAAAACGTCGCAAGCCTATATCGGCACCCCGAAGCTGACTTCAATAATCAAATGCAATGATGCTTTGCGGGACAAGGTCCGGGAACTTCTTGCAGAAGCGTTATCCAAAGTTTCTAATGAGGCTGATGAAGATATTTTGGATGAAGTAAACTCGTGTGATCCAATTCGGATTGCTGTCTCTGTGGAGTCTGTATTGTTTGAAAAAATAGGCCGCTCTAATGGGTCTCAGAAGTTTAAATACAGATCTATAATGTTCAACATCAAGGATCCGAATAACCCAGATTTGCGAAGAAAAGTCCTTCTTGGACAAATCAAACCAGAGAGACTAATTGATATGAGCCCTGAAGAAATGGCAAGTGATCAAAGGAAACGTGAGAATAAACAAATTAAAGAGAAAGCTTTATTTGATTGTGAGCGTGCAGGCGCACCGAAAGCCACAACTGATCAGTTCAAGTGTGGTAGGTGCGGGCAGCGGAAGTGCACTTACTATCAAATGCAGACTCGGAGTGCAGATGAACCCATGACAACCTATGTAACATGCGTAAACTGCAACAACCACTGGAAATTTTGTTAG 1155 0.4416 MEKELLELFESAKKAAEAAAADGAPSDGSEESRCVDALKQLKKFPVTMQVLVETQVGKHLRPLTKHPRERIQAVASDLLEIWKRIVLEETARNKKNGSSEIKSSAKVEVARAETVKVEKVQRSNSAKFEKVSKAETIKVEKTDQKSEKFSWSETVKVEKKFENAETIRVEKIGGGESVKVEKITKEEKQASGIRKTSQAYIGTPKLTSIIKCNDALRDKVRELLAEALSKVSNEADEDILDEVNSCDPIRIAVSVESVLFEKIGRSNGSQKFKYRSIMFNIKDPNNPDLRRKVLLGQIKPERLIDMSPEEMASDQRKRENKQIKEKALFDCERAGAPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKFC* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02383 384 CDD Zn-ribbon_TFIIS 337 383 - -
Eupl05g02383 384 FunFam Probable Transcription elongation factor S-II 313 384 - -
Eupl05g02383 384 ProSiteProfiles TFIIS N-terminal domain profile. 10 89 IPR017923 -
Eupl05g02383 384 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 99 IPR035441 -
Eupl05g02383 384 PIRSF TFIIS 2 384 IPR035100 -
Eupl05g02383 384 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 103 IPR035441 -
Eupl05g02383 384 SMART mid_6 214 322 IPR003618 GO:0006351
Eupl05g02383 384 Pfam TFIIS helical bundle-like domain 37 86 IPR017923 -
Eupl05g02383 384 CDD TFIIS_I 24 86 - -
Eupl05g02383 384 Gene3D - 192 312 IPR036575 GO:0006351
Eupl05g02383 384 NCBIfam transcription elongation factor S-II 11 384 IPR006289 GO:0003676|GO:0005634|GO:0006368
Eupl05g02383 384 Pfam Transcription factor S-II (TFIIS) 344 382 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl05g02383 384 ProSiteProfiles Zinc finger TFIIS-type profile. 342 382 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl05g02383 384 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 384 - -
Eupl05g02383 384 SUPERFAMILY Zinc beta-ribbon 322 382 - -
Eupl05g02383 384 SUPERFAMILY Elongation factor TFIIS domain 2 205 314 IPR036575 GO:0006351
Eupl05g02383 384 SMART TFS2_5 8 88 IPR003617 GO:0005634
Eupl05g02383 384 ProSitePatterns Zinc finger TFIIS-type signature. 346 381 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl05g02383 384 ProSiteProfiles TFIIS central domain profile. 216 339 IPR003618 GO:0006351
Eupl05g02383 384 SMART Cys4_2 344 383 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl05g02383 384 Pfam Transcription factor S-II (TFIIS), central domain 213 330 IPR003618 GO:0006351
Eupl05g02383 384 Gene3D - 313 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02383 Eupl-Chr5 51337220 51343073 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Eupl05g02383 TFIIS_M 9.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02383 K03145 - msin:131223869 531.946