Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02376 ATGCCTTATATCCCTCCCCACCTCAGGACTTCATCTCCGTCTCTTTCTTCTTCTCCAACTCAAAACAAAACCTCCACAGAAACCCTAGAAACCGATCAACATAAGCTCTCCTCTTCTTCGAATCCTCACTATTCTTCTCTTCAATCCAAGAACAACTCCTCTTCTCTCTCCTTCAATGCCACTCGCCGGACCTCCTCCAATCTCCCGCTCTCAAGATCTCTTTCTGTCCCCGAACCCGTTTTCCAGGAATGGAAGCCCTCCGAGCGGGTTTTCCGTATGAAACCCGAGCAGATTGAAGAGGTTCGCTTGCGGTTAAATGTTGATGTTACTGTCGCTCCAGACTCCTCTCCTGCACCTGCACCTGCACCTGCACCTATCGAATCATTTACAGACATGTGTTTGCACTCAAGCATCATGAAGGATATTGCGTTTCATGAATACACTAGACCGACTTCTATTCAAGCACAGGCCATGCCAATTGCTCTCACTGGAAGAGATCTTTTGGGTTGTGCTGAGACGGGGAGTGGGAAAACTGCTGCTTTCACTATTCCTATGATTCAGCATTGCTTGGCTCAACCTCCTATTCGGCGTGGTGATGGGCCCTTGGCATTGGTCTTGGCTCCTACTAGAGAGCTTGCCCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGTAGATCCCTGGAGTCCTTTAGAACTGCTATTGTTGTGGGTGGAACAAATATAGCAGAGCAGAGGTCTGAGCTACGAGCAGGAGTGAACATTGTGGTTGCAACTCCTGGAAGATTTATTGATCATTTGCAACAAGGGAACACGTCCCTCTCTAGGATCTCATTTGTTGTTTTAGATGAGGCTGATAGAATGCTGGACATGGGTTTTGAACCACAGATAAGAGAGGTGATGAGAAATCTTCCGAAAAATCACCAAACATTGTTATTTAGTGCAACCATGCCAGTGGAGATTGAAGCGCTTGCACAGGAATACCTAACAAACCCAGTGCAAGTAAAGGTTGGAAAAGTAAGTAGCCCAACAGCGAATGTATCTCAAATTTTGGAAAAGGTTGCAGAGAGTGAGAAGATCGATCGGCTTCTAGCTTTGCTTGTGGAGGAATCATCTCAGGCTGAAAGATCTGGCCATCCCCTTCCCTTAACCATTGTTTTTGTTGAAAGGAAGACTAGGTGCGATGAAGTTGCAGAAGCTCTGGTAGCACAAGGTTTGCTCGCGGTTGCTCTTCATGGTGGCCGTAGCCAAACTGAACGAGAGGCAGCTCTTCGTGATTTTAGAAATGGTTCTACCAATATCTTGGTTGCCACTGATGTTGCATCCCGTGGTTTGGATGTCACTGGAGTTGCTCATGTTGTTAATCTGGATCTTCCAAAGACAATGGAGGATTATGTGCACCGGATTGGAAGGACGGGGCGTGCAGGATCAACAGGCCAAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTGGCACATATAAGGAAAGCAATTGCGGATGTGGAATCTGGAAACACAGTGGCATTTGCAACTGGGAAGGTTGCAAGGAGGAAGGAGAGAGAAGCAGCAGTTGCACATAGAGAAGCAAGGCTTGGACTATCTAACCTCTCCGTGACGGGTCCCACATCTATAAACATTGAGGACAAGTACAGATACATGCTTACCCCTACAAACACGAAGGGAGAGGGTGCGGCTGATGATGCTTGGGGTGACTGA 1719 0.4689 MPYIPPHLRTSSPSLSSSPTQNKTSTETLETDQHKLSSSSNPHYSSLQSKNNSSSLSFNATRRTSSNLPLSRSLSVPEPVFQEWKPSERVFRMKPEQIEEVRLRLNVDVTVAPDSSPAPAPAPAPIESFTDMCLHSSIMKDIAFHEYTRPTSIQAQAMPIALTGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNIAEQRSELRAGVNIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPKNHQTLLFSATMPVEIEALAQEYLTNPVQVKVGKVSSPTANVSQILEKVAESEKIDRLLALLVEESSQAERSGHPLPLTIVFVERKTRCDEVAEALVAQGLLAVALHGGRSQTEREAALRDFRNGSTNILVATDVASRGLDVTGVAHVVNLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVAHIRKAIADVESGNTVAFATGKVARRKEREAAVAHREARLGLSNLSVTGPTSINIEDKYRYMLTPTNTKGEGAADDAWGD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02376 572 Pfam DEAD/DEAH box helicase 151 321 IPR011545 GO:0003676|GO:0005524
Eupl05g02376 572 CDD DEADc 138 335 - -
Eupl05g02376 572 CDD SF2_C_DEAD 346 484 - -
Eupl05g02376 572 SMART helicmild6 394 475 IPR001650 -
Eupl05g02376 572 MobiDBLite consensus disorder prediction 9 72 - -
Eupl05g02376 572 Gene3D - 83 334 IPR027417 -
Eupl05g02376 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 516 IPR001650 -
Eupl05g02376 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 496 IPR027417 -
Eupl05g02376 572 Gene3D - 335 508 IPR027417 -
Eupl05g02376 572 SMART ultradead3 146 349 IPR014001 -
Eupl05g02376 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Eupl05g02376 572 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 20 502 - -
Eupl05g02376 572 Pfam Helicase conserved C-terminal domain 358 475 IPR001650 -
Eupl05g02376 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 334 IPR014001 -
Eupl05g02376 572 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Eupl05g02376 572 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02376 Eupl-Chr5 51228672 51256695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02376 127 488 Eukaryotic Initiation Factors Gene Family AT3G13920 35.342 2.64e-65 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02376 K12823 - nnu:104594469 909.827