Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02360 ATGGCATCCGGAGAAATGGATTTGGTCCCAGAGCAGAGGATGGAGAATGGGATGAATTCGCAGATGGTTTTCCAGGGCGAGAACTTGCAATTCAACTGCGGGGCTCAGGAAGGACCGCAACGCCGCGTTGGCGATCCTGGACGGAAAACCAGAGAAGTGAGTGGTTTTGTTGACGAGAAGATGTTTTCTGTCGAACGAGAGCGGTATTTTCGGACTCAGGGTGCAGATTTCCGGCGAAATATTTATGACTCAACGGGCCGGCAAGAGCGTCCGGAAAATCAGAACTGGAATGGTGAGGGAAGCACGGGGACACCGAGTGGGGATGGATCGGAAGGCGAAGAGGAAGATGAAGAGGATGACGAAGAGGATGAAGACGATGAGGTTGATGAGGGAGACGGTGAAGTGGAGGGTTTGGTTGCTGTCGACGGCACTAAGAATAACAATAGCAGCGGTAGTGTACATAGTAGCTCAGAGAACGAGAAAGGAAATTTACAGAAACACCATTCATTCGGATCAAGTAGAGGAGTGTTGCTGAAGGATGGCCATGTAGTTGACTCTGCAAATAATATTAGAGGGAGTTCAAGTGAACAACACAACCAGCAAGGAAGGGTCAACCATTACGAGAATGCCATTACGATAGCTGAACCTGATATGTATTATCCACAGTTTCTACAAGGGCCAGAGGGGCCTGCCCTTGGACAGAAGGAAACAGGAGGGGAGAATGGGTGTGGGTTTAGCGGCAGAAAGGATGTTTATTTGTCAATGGAATCAGGGGAGTCTCTGAGGGCAATTCTCTCAGATCCCGTCACAGGAACTTTTATGGATGATGCTATGATATTGCCTTGTGGGCACTCATTTGGAAGTGGTGGAATGCAGCAAGTTATTAGAATGAAAGTTTGCTATACTTGTTCACGGTCAGTTTCAGAAGAATCAGTGGCACCAAACCTCTCTCTCCGTTCTGCAGTTCAGGCATTTCGCAGGGAAGAAGAGTTGCAGTCTTACAGGGTATCCAAAAGAAGAAGAGAATGGTTTGAACAGGACAAGGGTAGTTGTGGTGATCCATTTTCCATGGATCTTTCAAGGGGTAAAGGCGTTCAGTTTCCATTTGTTGTCACTGACCGGGTTATTATCAAGGGAAACAAGAGGACACCACCACGCTTTGTTGGACGTGAGGCTGTTGTAACAACACAATGCTTGAATGGGTGGTATGTGGTAAAGACATTGGACAATGCTGAGAGCGTCAAATTACAGTATCGTTCTTTAGCTAAAGTTTCTGATAGTCCGTCCTCGAATATGATGTCAAGTAAGCACTCCAAACTGGCTCTAGACTTGGTATACAACATGAAGCAGTGA 1353 0.4701 MASGEMDLVPEQRMENGMNSQMVFQGENLQFNCGAQEGPQRRVGDPGRKTREVSGFVDEKMFSVERERYFRTQGADFRRNIYDSTGRQERPENQNWNGEGSTGTPSGDGSEGEEEDEEDDEEDEDDEVDEGDGEVEGLVAVDGTKNNNSSGSVHSSSENEKGNLQKHHSFGSSRGVLLKDGHVVDSANNIRGSSSEQHNQQGRVNHYENAITIAEPDMYYPQFLQGPEGPALGQKETGGENGCGFSGRKDVYLSMESGESLRAILSDPVTGTFMDDAMILPCGHSFGSGGMQQVIRMKVCYTCSRSVSEESVAPNLSLRSAVQAFRREEELQSYRVSKRRREWFEQDKGSCGDPFSMDLSRGKGVQFPFVVTDRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDSPSSNMMSSKHSKLALDLVYNMKQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02360 450 MobiDBLite consensus disorder prediction 87 108 - -
Eupl05g02360 450 ProSiteProfiles U-box domain profile. 260 332 IPR003613 GO:0004842|GO:0016567
Eupl05g02360 450 MobiDBLite consensus disorder prediction 33 54 - -
Eupl05g02360 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 20 433 - -
Eupl05g02360 450 MobiDBLite consensus disorder prediction 142 159 - -
Eupl05g02360 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 332 IPR013083 -
Eupl05g02360 450 SUPERFAMILY RING/U-box 262 331 - -
Eupl05g02360 450 MobiDBLite consensus disorder prediction 67 175 - -
Eupl05g02360 450 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02360 Eupl-Chr5 50933076 50954320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02360 219 436 Plant U-box Gene Family AT5G05230 59.910 1.67e-84 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02360 - - nnu:104593764 565.844