Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02358 ATGGCGTCGAAGGTTTGCATGAATGTTTCATGCGGGGTTACATCGTCGATTGAATGGAGGAAAGGGTGGAGCTTGCGATCTGGTGGATTCGCAAATCTCTGTGATAAGTGCGGGTATGCTTATGAGCAATTAGTGTTCTGTGACACATTCCACTTGGAAGAATCTGGTTGGAGGGAGTGCAGTTCTTGTGGCAAGCGTCTCCATTGTGGATGTATTGCTTCGAAGTCTTTGCTCGAGCTACTTGATAATGGGGGTGTAGAGTGTATTAGCTGCATGAAAAGTTCGGAACTTTCCTCTATCCCAAATGATGAAAAGCCACATGGTTTTGGTACAACAGCAACAGATAATGTTGGAGAACTCCAATCTATTTCTGTGCACAATAAAATGGATGGTGATAACATTGATATGGGGAAGCTTATGCAGTTGGGAAAAAATATTGAGGGTAATAGGCGGAACAGCTTGCTTCAGAATGATGACACAAATGGGTCTCTTGGGAAAATTAAAAGAGAGCAAGTCATACCTCCTATTGGGGAAGTTGGAAGCACGAGCTTTTCAAATTTAAATCATCCATCCATTGGATCATCTCAAATTGCCAAACGAGACAACAGTAAAGAAACTGTTGGGGTTAAAGATATGTATGAGTCACTATCTCAAACATGTTTGAGTATCACCCTGGGTGCCTCTTCGAGAACCCCAACTCTTGCACTGCCCCTTCCTGGTGCAGTTGTTGAAGGAAGGGAACAGAGCAAAATTCTGTCTCCATTTCAACAAGGCCAAAGGTCCCGCCATCTTTTGCCCAAGCCTCCGAAGATGGGCCTTGGCACAGGTACAGAGGCATCTAAAGACATACTACCACAGATACGTGTTGCAAGGCCACCTGTTGAAGGACGGGGCCGGAACCAGTTGCTTCCACGTTATTGGCCGAGGATTACAGACCAAGAACTGCAGCAAATATCTGGAGATTCAAATTCCACAATTGTGCCGCTGTTCGAGAAGGTTCTGAGTGCCAGTGATGCCGGTCGAATTGGTCGTTTAGTTCTCCCAAAGGCATGTGCTGAGGCATATTTTCCTCCTATCTCTCAACCAGAAGGTCTTCCGTTAAGGATTCAAGATGCGAAGGGAAAAGACTGGGTGTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTCTTAGAGGGTGTAACACCTTGCATACAGTCCATGCAATTACAAGCTGGCGATACTGTAACATTCAGCCGGATAGATCCCGAAGGAAAACTGGTTATGGGGTTTCGAAAGGCGTCAAACTCTTTGACTCTGCAGGATACCCAAATATTAGCCATTGCTAATGGTGCAGTTGCCAACGAAACTTTCTTTTCGGGTGTTATTGAGAACCTACCTATAATAAGTGGTTACTCTGGCCTTCTTCAGTCACTGAAGGGAAGCACAGATCCCCATCTAAATGCTCTGTCAGAACATTTGCATTCAGTTGATGGGGATGTTAGCTGGCGGAGAACTGAGAGGCATGGAGGACGGCCAAACGAGGGCTTGCCGCTGCAGCCACTGTTGATTTCAGAGAAGAAAAGAAGTCGTAACATTGGTTCCAAAAGTAAGAGGTTGCTCATAGATAGTGAAGATGCTCTGGAACTCAAGCTTACATGGGAAGAGGCACAAGATTTGCTTCGCCCACCACCAAGTGTCAAGCCTAGCGTTGTTATGATTGAGGACCACGAATTTGAAGAATATGAAGAACCCCCAGTTTTTGGGAAGAAGACTATTTTCACAGCCCGCCCATCTGGGGGACAGGATCAATGGGCTCAGTGTGATAGTTGCTCCAAATGGCGAAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGACATGTGCTGACAATGCTTGGGACTTGAAAAGGTGTGTGTGTTCTATACCGGATGAGTTGAACCCAAAGGAACTAGAAAATCTTCTGAGACTGATTATGGATTTTAAAAAGCGGAGAATTGCAGCAAACAATAAGCTAGCGCAAGAACGTGAACCTTCTGGCCTAGATGCTCTGGCTACTGCTGCGGTTCTTGGAGACAATGGGGGCGACTCTGGCATGCCATCTGTCGCGACCACCACCAAACACCCCCGCCATCGACCTGGCTGCACGTGCATTGTGTGCATTCAACCCCCCAGCGGGAAGGGCCCGAAGCACAAACCCTCGTGCACATGCAACGTGTGCATGACTGTGAAGCGTCGTTTCAAAACCCTCATGATGCGCAAGAAGAAACGCCAGTCAGAGAAGGAGGCAGAGATTGCCCAGAGGAAGCACCATATCTGGGGTCCTAGGGATGAAGTAGAAGTAGACAGTGCTTCGAGATGCATATTATTATCTCTAGATCCTTCCGAGAATGAAACCAGGCAAGCAAATGAGTCACAGTGTGTAACTGAGAAAGCCGCTGAGACCAGCAAGAGTCAGATAGACTTGAATTGTCATCCCGACCGTGAAGAAGACCTGCAAGCAGGGTCGGCACGTGTAAGCATGATGAGTCTTCTTCAGGTGGCGAGTCTTCCATTAGAGATGTATCTGAAGCAGAACGGGCTTACGAGCTTAATATCTGAGCAGCAAGCCAGCTCGAGCTCCCATGCACTGCCACAGGCTACTGGGGAAAGCGAGGGACGGCCGCCCGATGACAGCTACTTTGCTTCTGCGGGTCGGGAGCGAGAGAGTGGGGGTGATGAAGGGTATGGTGGGCCTGATCAAGCCTGA 2739 0.4779 MASKVCMNVSCGVTSSIEWRKGWSLRSGGFANLCDKCGYAYEQLVFCDTFHLEESGWRECSSCGKRLHCGCIASKSLLELLDNGGVECISCMKSSELSSIPNDEKPHGFGTTATDNVGELQSISVHNKMDGDNIDMGKLMQLGKNIEGNRRNSLLQNDDTNGSLGKIKREQVIPPIGEVGSTSFSNLNHPSIGSSQIAKRDNSKETVGVKDMYESLSQTCLSITLGASSRTPTLALPLPGAVVEGREQSKILSPFQQGQRSRHLLPKPPKMGLGTGTEASKDILPQIRVARPPVEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDAKGKDWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKASNSLTLQDTQILAIANGAVANETFFSGVIENLPIISGYSGLLQSLKGSTDPHLNALSEHLHSVDGDVSWRRTERHGGRPNEGLPLQPLLISEKKRSRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPSVKPSVVMIEDHEFEEYEEPPVFGKKTIFTARPSGGQDQWAQCDSCSKWRRLPVDVLLPPKWTCADNAWDLKRCVCSIPDELNPKELENLLRLIMDFKKRRIAANNKLAQEREPSGLDALATAAVLGDNGGDSGMPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHKPSCTCNVCMTVKRRFKTLMMRKKKRQSEKEAEIAQRKHHIWGPRDEVEVDSASRCILLSLDPSENETRQANESQCVTEKAAETSKSQIDLNCHPDREEDLQAGSARVSMMSLLQVASLPLEMYLKQNGLTSLISEQQASSSSHALPQATGESEGRPPDDSYFASAGRERESGGDEGYGGPDQA* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02358 912 Pfam CW-type Zinc Finger 600 642 IPR011124 GO:0008270
Eupl05g02358 912 ProSiteProfiles Zinc finger CW-type profile. 595 645 IPR011124 GO:0008270
Eupl05g02358 912 MobiDBLite consensus disorder prediction 180 200 - -
Eupl05g02358 912 Gene3D - 592 644 - -
Eupl05g02358 912 ProSiteProfiles B3 DNA-binding domain profile. 330 431 IPR003340 GO:0003677
Eupl05g02358 912 MobiDBLite consensus disorder prediction 254 278 - -
Eupl05g02358 912 Gene3D - 308 434 IPR015300 -
Eupl05g02358 912 MobiDBLite consensus disorder prediction 795 817 - -
Eupl05g02358 912 SUPERFAMILY DNA-binding pseudobarrel domain 327 429 IPR015300 -
Eupl05g02358 912 CDD B3_DNA 328 429 IPR003340 GO:0003677
Eupl05g02358 912 MobiDBLite consensus disorder prediction 864 912 - -
Eupl05g02358 912 Pfam B3 DNA binding domain 330 429 IPR003340 GO:0003677
Eupl05g02358 912 FunFam B3 domain-containing transcription repressor VAL1 308 435 - -
Eupl05g02358 912 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 868 - -
Eupl05g02358 912 SMART B3_2 330 431 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02358 Eupl-Chr5 50896710 50910431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02358 4 882 B3 DNA Binding Superfamily AT4G32010 50.281 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl05g02358 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02358 K09287 - nnu:104593767 1457.2