Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02351 ATGGTGACTTCTCACCACTGGGTGCATCGGTTCCTCCTCGACACGGTTCCACCAACCAATGGAAGCAGACCACGTGGCTCTTACACTAGCGAGGCGAACTTCGACACCAACATGGTGATCATCCTGGCAGCTTTGCTATGTGCACTGATTTGTGCCCTTGGATTGAACTCAATTTTACGTTGTGCTCTAAGATGTGGTCGTCGGATCGCATTCGAGACACCGGATGAGGCTGCTGCACGTCTCGCTGGGACTGGCCTTAAGAAGCGCACATTGCGTCAAATTCCAGTGGCAGTGTATGGGTCGGGAGCAAATATTCCAGGTACGGATTGCCCAATTTGCCTTGGAGAATTTGAGGATGGCGAGAAGGTTCGGGTGCTACCGAAATGTAACCATGGGTTCCATGTGAGGTGTATAGACCCATGGCTAGCATCACACTCTTCGTGTCCAACTTGCCGGCATTCGTTGCTCGATAAGCCATCATCATCTGATGCAGCTGATGACCACGCCGGAATCTGGCCACCGGGAAATGGATCGAGCGGACAAGGAGGGGTGATCGTAATCGTGGACGAGGTGAGTTGA 579 0.5268 MVTSHHWVHRFLLDTVPPTNGSRPRGSYTSEANFDTNMVIILAALLCALICALGLNSILRCALRCGRRIAFETPDEAAARLAGTGLKKRTLRQIPVAVYGSGANIPGTDCPICLGEFEDGEKVRVLPKCNHGFHVRCIDPWLASHSSCPTCRHSLLDKPSSSDAADDHAGIWPPGNGSSGQGGVIVIVDEVS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02351 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 157 IPR013083 -
Eupl05g02351 192 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Eupl05g02351 192 MobiDBLite consensus disorder prediction 162 183 - -
Eupl05g02351 192 Pfam Ring finger domain 109 152 IPR001841 -
Eupl05g02351 192 SUPERFAMILY RING/U-box 90 158 - -
Eupl05g02351 192 CDD RING-H2_EL5-like 109 152 - -
Eupl05g02351 192 PANTHER RING-H2 FINGER PROTEIN ATL78 26 162 IPR044602 GO:0016567|GO:0016740
Eupl05g02351 192 SMART ring_2 110 151 IPR001841 -
Eupl05g02351 192 FunFam RING-H2 finger protein ATL72-like 77 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02351 Eupl-Chr5 50795946 50797629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02351 10 160 C3H Transcription Factor Family AT3G10910 59.639 6.82e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02351 - K19040 nnu:104593771 281.182