Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02323 ATGGCGATATCACCTCAGGTATTCCCGCCAAGAAAGCGTAGGCCATCGGCCGGATCTTTCATCTCTCCGAATTTATCAGATCTGAAACTTGTTCAATCGCTTCTGCTTCTTTCTCAAGACATCTCCGTTTTACAACCTCTCGGTTTCCTCTTGAAATGTCGTTCAGCATCGATTATTCGCAAATCGAAGCTTCTTGCAATCTTATTCGAAGAGCTTCTACGAAATCCGATCTGTTTTCTTCCGCGCTCGGCTGTTCTGTGCTTCGAAGAGATCTATATCGTGTTACAGCGAATCAAAACTCTGTTGGAAGATTGCTCGAACGGGAGCAAGATGTGGCTTCTGATGCAGAACGAATCGGTCTCGAATAGTTTTCACGAGCTTACTGTAGATTTATCGATGCTTCTCGATATATTTCCATTAAAAGAGTTTGATCTGAGCGAAGACGTGAAGGAGATGATTGTGTTGACCCGAAAGCAGTGTTGGGAGAGGAAGGCTTTCGTCGATCCGATGGACAAGAATCTCCGATCCGAGATGTTGAAGCTGCTCGATCAGATCAAGAGAGAAATCGTTCCGGATCACTCGAAACTAAGAGAGATCTTCGAGAAACTAGGATTACATGATTCAGCAAGTTGCAGAGAGGAGATCGAGAGCCTTGAAGACGAGGTTCAGAATCAGGTCTGTGAGAAATCGACGGCTGAGATGGTCGCTTTGATCGGTCTTGTTCGATACGCAAAATGCGTTCTCTTTGGTGCTTCGACGCCGAGATCTGACACCAAATCCCAATTCCCGGTGACGGATATGGTTTTCCCAGCTGATTTCCGCTGCCCTATCTCCCTCGACTTGATGAGAGATCCAGTCGTCGTGGCGACAGGACAGACGTACGATCGAGCCTCCATCAGCCTTTGGATCGCGTCGGGACACAACACGTGTCCCAAAACGGGCCAATCTCTGGCCCACACAAATTTGATCCCGAACCGTGCTCTGAAGAACCTGATCGCTCTATGGTGCCGCGAGCAGAAAATCCCGTTTGAAACGGCTCCGACAAACGACAGAGTTAAAGGCTTTACTGTGAACAAGGCGGCCATGGAGGCGACGAGGATGACGGCGTCATTCCTTGTCAACAAACTTTCCGTTTTGCCGTCAACGGAAGCTGCCAACCGCGTTATTCACGAGCTTCGTTTACTTGCTAAAACAGACTCTGATAACCGAGCCTGCATAGCCGAGGCAGGAGCGATACCTTGGCTTGTACGGTACCTAGGCTCGGATAGTCCTAACCTACAGGTTAACGCCGTTACGACGGTCCTCAACCTTTCCATCCTCGAATCCAATAAACGAAGGATAATGGAAACTGACGGCGCTTTGGACGGCGTCATCGAGGTATTGAGATCAGGTGCCTCTTGGGAGGCAAAGGAGAATGCCGCCGCTACGTTGTTCAGCTTATCAGCCGTTCACGAATACAGAAAGAGAATTGGAAGGAAGACACGTGTCATAAAGGGTTTGGTGGAACTTGCTAAAGCCGGACCCGCAAATGCAAAGAAGGATGCTTTGGTGGCAATTTTGAATTTGGCGGGAGAGAGGGATGCCGTCGGTAGGTTAATTGAGGGAGGAGTTGTGGAAATGGCTGTACAAGTGCTGAATGAGCTACCGGAGGAAGCGGCGGCGATTCTAGCCTCCGTGGCGAAGAGGGGTGGAGCAGTGTTCATAGCAGCGTCTCATCGGGCAATTCGAAAGTTGGCAGTAGTTTTACGGGATGGTCCAGAGAGAGCAAGAGAAAGCGCGGCGGCGGGGCTTGTCTCGGTTTGCCGTAGAGGTGGGCCGGAGGTGGTGGCAGAACTCGCCGCAACACCTAGGATTGAAAGGGCAATTTGGGAAGCGATGGGGATCGGGTCGGTGAGAGCGAGAAGGAAGGCATCCTCGCTATGGCGGATTCTCCGGCGATTTGCGGCTGGAATGGAAGATCAAACCGTTGGATTCTCGGCAAATGTCAGCATATCAAGAACAGCCTTGCACAGCTGA 2016 0.5045 MAISPQVFPPRKRRPSAGSFISPNLSDLKLVQSLLLLSQDISVLQPLGFLLKCRSASIIRKSKLLAILFEELLRNPICFLPRSAVLCFEEIYIVLQRIKTLLEDCSNGSKMWLLMQNESVSNSFHELTVDLSMLLDIFPLKEFDLSEDVKEMIVLTRKQCWERKAFVDPMDKNLRSEMLKLLDQIKREIVPDHSKLREIFEKLGLHDSASCREEIESLEDEVQNQVCEKSTAEMVALIGLVRYAKCVLFGASTPRSDTKSQFPVTDMVFPADFRCPISLDLMRDPVVVATGQTYDRASISLWIASGHNTCPKTGQSLAHTNLIPNRALKNLIALWCREQKIPFETAPTNDRVKGFTVNKAAMEATRMTASFLVNKLSVLPSTEAANRVIHELRLLAKTDSDNRACIAEAGAIPWLVRYLGSDSPNLQVNAVTTVLNLSILESNKRRIMETDGALDGVIEVLRSGASWEAKENAAATLFSLSAVHEYRKRIGRKTRVIKGLVELAKAGPANAKKDALVAILNLAGERDAVGRLIEGGVVEMAVQVLNELPEEAAAILASVAKRGGAVFIAASHRAIRKLAVVLRDGPERARESAAAGLVSVCRRGGPEVVAELAATPRIERAIWEAMGIGSVRARRKASSLWRILRRFAAGMEDQTVGFSANVSISRTALHS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02323 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Eupl05g02323 671 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Eupl05g02323 671 Pfam Armadillo/beta-catenin-like repeat 399 438 IPR000225 GO:0005515
Eupl05g02323 671 Gene3D - 359 622 IPR011989 -
Eupl05g02323 671 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Eupl05g02323 671 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Eupl05g02323 671 SMART arm_5 484 524 IPR000225 GO:0005515
Eupl05g02323 671 SMART arm_5 399 439 IPR000225 GO:0005515
Eupl05g02323 671 SMART arm_5 441 482 IPR000225 GO:0005515
Eupl05g02323 671 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Eupl05g02323 671 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Eupl05g02323 671 SUPERFAMILY RING/U-box 264 342 - -
Eupl05g02323 671 Coils Coil 208 228 - -
Eupl05g02323 671 CDD RING-Ubox_PUB 270 322 IPR045210 -
Eupl05g02323 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Eupl05g02323 671 PANTHER U BOX DOMAIN-CONTAINING 57 644 - -
Eupl05g02323 671 CDD MLKL_NTD 52 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02323 Eupl-Chr5 50331614 50334191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02323 9 664 U-box Gene Family AT5G01830 57.879 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02323 - - nnu:104594520 940.643