Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02306 ATGTCCAGAGACAGAGACATATTTGATGAGATAGGCAAGAAGGTTAATAGAGAAGCCGATGCTTCTGATCGAATGAGAAGGAGAGACTTATTAGGCCCACCTGGGACCTTAAACACCATTACACCTTGTGCTGCGTGTAAGCTTCTAAGACGACGGTGTGCGCAAGAATGCCCTTTCTCTCCATATTTCTCTCCTCACGAACCCCAGAAATTTGCTTCTGTCCACAAAGTCTTTGGTGCAAGCAACGTCTCGAAGATGCTAATGGTACCAACTCTTTCTCTAATCTTCTATCCTTATTCCCTTATTAATTACCATCTTTTAATCGACCAGGAGGTGCCGGAGAGCCAAAGAGCTGATGCGGCAAATAGCCTTGTTTATGAAGCAAACGTGAGGATCGGGGATCCAGTATATGGGTGCATGGGTGCAATTTCAGCCTTGCAACAACAAGTCCAATCCTTGCAAGCCGAGCTCAACGCAGTAAGAGCTGAGATACAGTACAGGTATAGGGAAATTATCATTCCTCCATCTCATGCCGCTTTGCTTTCTCCCGGGACGGTGTCGGTTGCTGCATCGCGGCCACCACCCCCTCCTCCGCCTCCTCCTCCTCCTCGTCCTCCTTCATCTTCCATGTATACGCTGCATTCGAGCTCAACCGATTATATTGCGAATGAGAATATCACGTATTTTGTCTAA 693 0.4733 MSRDRDIFDEIGKKVNREADASDRMRRRDLLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMVPTLSLIFYPYSLINYHLLIDQEVPESQRADAANSLVYEANVRIGDPVYGCMGAISALQQQVQSLQAELNAVRAEIQYRYREIIIPPSHAALLSPGTVSVAASRPPPPPPPPPPPRPPSSSMYTLHSSSTDYIANENITYFV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02306 230 Pfam Lateral organ boundaries (LOB) domain 42 87 IPR004883 -
Eupl05g02306 230 Pfam Lateral organ boundaries (LOB) domain 110 161 IPR004883 -
Eupl05g02306 230 ProSiteProfiles LOB domain profile. 41 164 IPR004883 -
Eupl05g02306 230 Coils Coil 143 163 - -
Eupl05g02306 230 MobiDBLite consensus disorder prediction 189 208 - -
Eupl05g02306 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 201 - -
Eupl05g02306 230 MobiDBLite consensus disorder prediction 184 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02306 Eupl-Chr5 50077179 50078168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02306 27 188 AS2 family AT2G40470 69.822 9.01e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl05g02306 LOB 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02306 - - vvi:100251929 283.493