Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02250 ATGCTCCATCACACCCATCTCTCTCTCTCTACAAAACCCTTTCTCTCTGATTTCTTACTTGTTCATTCTTTTATCTCCACTCAAACTTTCAGGAATAGAAGCAAACGAAGAAGAGGGGAACACTGGAAGAACAAAACCCAGTTTCTCTTCATTCTTTTGTTTTTACATTTCTGCAACGTTTTAATGGCTATGGAGAATCTAAATCAGTTATTGAATGGGTTTCACAGATACCCGTTTCAGCTTCTTCAAATCCAGATGAAAAGAAAAGCTGATTGGTGCCCAGTTTCAAATAAAAAGAAGGAAAAGTGGAAGAGTCAGTCCTCAAGAAAAAACCCATTTCTACTTTTCGGGTTCCAGAACAAGTTCAACTTCATCCTCCGTAAGCACCTATTCTTGCTTCTTCAACTACTGGTCTTCGCCTGCCAACCCGTCTCGAGCCACCTGTGGGATGGGGTTATTGTCACACAAGCAGACTATCAAGCTCTTCAAGCCTTCAAACATGATTTAATTGATCCTAAAGGGATCCTTCGGAGCTGGAACGACAGTGGTTATGGAGCTTGTTCGGGTAGGTGGATAGGGATCAAGTGCGTTCAGGGTAAGGTTATTGCGATCCAGCTCCCCTGGAAAGGATTGGGAGGCCGAATATCAGAGAAGATCGCACAACTATCAGCGCTTCGAAAGCTTAGCCTCCATGATAATTTTATTAGCGGTATGATCCCTACGTCTCTGGGCTTCCTCCCAAATCTCAGAGGAGTTCATCTCTTCAACAACCGGCTTTCGGGTCCAATCCCTCCTTCAATTGGTTCCTGTCCTCTGCTTCAGACTCTTGATCTCAGTAACAATTCACTCACTGGAACAATCCCCGCTAGTATCGCGAACTCTACTAGGCTTTACAGGCTTAATCTTAGCTTCAATGCCATCACGGGTTCGATCCCAATTAGTCTCACTCATTCCCCTTCTCTCACCTTCCTCGCTCTCCACTACAACAATCTCTCTGGTTCTGTTCCTGACACTTGGGGTGGAAAAGAGGAGACCATCTATCAGCTTCAGTCCTTGACCCTTGATCATAACCTCGTCTCTGGAAGTGTTCCTGTTTCTCTGAGCAAGTTGAGTAAGCTTGAAGAGATTTCTCTGAGTCATAACCAGATCAATGGAGCAATACCAGATGAAATTGGGTCGCTCTCGAAGCTCCGAACACTAGATTTCTCTAATAATGCCATTACTGGAAGCTTTCCTGCTAGTCTTTGCAACCTCCCCATGCTGGTTCAATTGGATCTTGAAAGTAACCACCTTGAGAACCAAATCCCAGAAACCATAGACGGACTACAAAAGCTCTCAGTTCTCAACCTGAGGAGAAACCAGTTCAAAGGCCATATTCCAGCAACTCTCGGGAACATCTCCAGCCTCACCCAACTCGATCTATCCCAAAATAATCTCACCGGAGATATTCCAGATTCGCTCGTGAATCTACCCAATCTCAGCTCCTTCAATGTGTCTTACAACAACCTCTCTGGTTCTGTTCCCTTTCCCCTCTCGGAAAAATTCAATTCGAGCTCCTTTGTGGGGAACCTTCAACTATGTGGATACAGTGTTTCAACCCCATGTCCTTCTCCCCCACCTTCGCAAAATGTCCCACCTCTGTCAAAACCAGATCACCACAAATTGAGTACCAAAGACATAATTCTCATAGCTGCCGGAGCCCTCCTCGCAGTTTTGCTTTTACTATGTTGTATTTTGCTCTGCTGTTTGGTTAGGAAAAGAGCTGCTTCAAAAGGGAAGAACGGTCACACTGCCGGAAGGGCAGCCACCGCGAGAAGCGAAAAGGGGGCGGCTGCAATAGGGACTGAAATGGAAGCGGGTGGTGAGGCCGGAGGGAAGCTAGTCCACTTTGATGGGCCGCTGGTGTTTACAGCCGATGATCTGTTGTGTGCGACGGCGGAGATAATGGGGAAGAGCAACTACGGGACAGTATACAAGGCAACGTTGGAAGATGGGAATCAAGTTGCAGTGAAGAGGTTGAGGGAGAAGATTGCAAAGAATCAGAGGGAGTTCGAAGTGGAGGTCAATGTGCTTGGGAAGATTCGACACCCAAATCTCTCGGCTCTCAGGGCTTATTACTTGGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGATTTCATGCCAAAAGGGAGTCTCGCAGCTTTCCTCCATGCTCGAGGTCCAGACATCCCCGTTGATTGGCCAACAAGGATGAACATAGCCATGGGCACCGCACGGGGACTGTGCTACCTTCACACCCATGAGAACATGGTACACGGGAACCTGACGGCTGGGAACATCCTACTCGACGAACACACAAACGCAAAGATCTCAGACTATGGCCTCTCTCGGCTCATGATCACTGCCGCCCATTCAAATGTGATCGCAACTGCTGGAGCCCTTGGCTATCGAGCGCCTGAGCTCTCAAAGCTCAAGAAGGCGAACACCAACACGAAGACTGACGTCTACAGCCTTGGGGTGATCATATTGGAACTCCTAACAGGGAAATCCCCTGGTGATGCAACAAGTGGAGTGGATTTGCCTCAGTGGGTGGCCTCAATCGTGAAGGAGGAGTGGACTAATGAAGTCTTCGACTTAGAGTTGATGAGGGATGCATCCACCACAGGTGATGAGTTGCTTAACACACTGAAATTGGCTCTGCATTGTGTCGACCCCTCCCCAGCAGCACGGCCAGAAGTTCAGCAAGTTCTCCAACAACTGGAGGAGATTAAACCAGAATTGGCTGCCAGTTTGGGTGATGACGGTGCCGGTGATGGTGATGGTGATGGTGATGGTGATGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTAGTGTTCCCTCCACAAGTGATTAA 2871 0.4796 MLHHTHLSLSTKPFLSDFLLVHSFISTQTFRNRSKRRRGEHWKNKTQFLFILLFLHFCNVLMAMENLNQLLNGFHRYPFQLLQIQMKRKADWCPVSNKKKEKWKSQSSRKNPFLLFGFQNKFNFILRKHLFLLLQLLVFACQPVSSHLWDGVIVTQADYQALQAFKHDLIDPKGILRSWNDSGYGACSGRWIGIKCVQGKVIAIQLPWKGLGGRISEKIAQLSALRKLSLHDNFISGMIPTSLGFLPNLRGVHLFNNRLSGPIPPSIGSCPLLQTLDLSNNSLTGTIPASIANSTRLYRLNLSFNAITGSIPISLTHSPSLTFLALHYNNLSGSVPDTWGGKEETIYQLQSLTLDHNLVSGSVPVSLSKLSKLEEISLSHNQINGAIPDEIGSLSKLRTLDFSNNAITGSFPASLCNLPMLVQLDLESNHLENQIPETIDGLQKLSVLNLRRNQFKGHIPATLGNISSLTQLDLSQNNLTGDIPDSLVNLPNLSSFNVSYNNLSGSVPFPLSEKFNSSSFVGNLQLCGYSVSTPCPSPPPSQNVPPLSKPDHHKLSTKDIILIAAGALLAVLLLLCCILLCCLVRKRAASKGKNGHTAGRAATARSEKGAAAIGTEMEAGGEAGGKLVHFDGPLVFTADDLLCATAEIMGKSNYGTVYKATLEDGNQVAVKRLREKIAKNQREFEVEVNVLGKIRHPNLSALRAYYLGPKGEKLLVFDFMPKGSLAAFLHARGPDIPVDWPTRMNIAMGTARGLCYLHTHENMVHGNLTAGNILLDEHTNAKISDYGLSRLMITAAHSNVIATAGALGYRAPELSKLKKANTNTKTDVYSLGVIILELLTGKSPGDATSGVDLPQWVASIVKEEWTNEVFDLELMRDASTTGDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPELAASLGDDGAGDGDGDGDGDGAGAGAGAGASVPSTSD* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02250 956 PRINTS Leucine-rich repeat signature 466 479 - -
Eupl05g02250 956 PRINTS Leucine-rich repeat signature 273 286 - -
Eupl05g02250 956 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 349 916 - -
Eupl05g02250 956 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 342 538 - -
Eupl05g02250 956 CDD STKc_IRAK 649 916 - -
Eupl05g02250 956 Pfam Leucine rich repeat 393 431 IPR001611 GO:0005515
Eupl05g02250 956 Pfam Leucine rich repeat 444 503 IPR001611 GO:0005515
Eupl05g02250 956 Pfam Leucine rich repeat 272 331 IPR001611 GO:0005515
Eupl05g02250 956 Gene3D Ribonuclease Inhibitor 312 410 IPR032675 -
Eupl05g02250 956 Gene3D Ribonuclease Inhibitor 155 311 IPR032675 -
Eupl05g02250 956 Gene3D Ribonuclease Inhibitor 411 536 IPR032675 -
Eupl05g02250 956 FunFam Pollen receptor-like kinase 1 720 925 - -
Eupl05g02250 956 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 156 310 - -
Eupl05g02250 956 Gene3D Phosphorylase Kinase; domain 1 649 720 - -
Eupl05g02250 956 SUPERFAMILY L domain-like 194 535 - -
Eupl05g02250 956 Pfam Protein tyrosine and serine/threonine kinase 646 913 IPR001245 GO:0004672|GO:0006468
Eupl05g02250 956 ProSiteProfiles Protein kinase domain profile. 643 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02250 956 Pfam Leucine rich repeat N-terminal domain 157 196 IPR013210 -
Eupl05g02250 956 MobiDBLite consensus disorder prediction 917 956 - -
Eupl05g02250 956 FunFam Leucine-rich repeat receptor-like protein kinase 628 719 - -
Eupl05g02250 956 ProSiteProfiles Leucine-rich repeat profile. 468 491 IPR001611 GO:0005515
Eupl05g02250 956 Gene3D Transferase(Phosphotransferase) domain 1 721 926 - -
Eupl05g02250 956 SUPERFAMILY Protein kinase-like (PK-like) 647 917 IPR011009 -
Eupl05g02250 956 SMART LRR_typ_2 246 270 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 466 490 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 418 441 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 442 465 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 394 417 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 319 341 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 222 245 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 271 294 IPR003591 -
Eupl05g02250 956 SMART LRR_typ_2 370 393 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02250 Eupl-Chr5 49286585 49290149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02250 110 939 Receptor kinase-like Gene Family AT3G51740 64.286 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Eupl05g02250 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02250 - - tss:122652751 1274.23