Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02238 ATGACCATGGCGAAAAGGCATTCGTATCAATGTAGGCATCCAATTGATGCATATCCTTTTGAGGCATTTTATCATGGCTCATGGCGGAGTATAGAGCGTGTGACAGTTAATGATGGGGGTATAACCATGCATTTTGATCACCATGGGTTCGAGGTGGAGGAGAAAATCCCTATTGTCAACCTTCGAATAAGATCGAGAAAAGCAAGTATATCTGATTGCCCCTGCTTCTTATGGCCTGGTGTGGATATATGTGTACTTTCAACCAATCCAAGTGAAGCTAGTTCAGGCGAAGAAAGACTCCAGCCCGCATGGCTTGATGCTAAAATTAATTCAATTGAGAGGAAGCCTCATGAGTCTCGATGCACCTGCCGGTTTTATGTAAACTTTTACAAAATCCATCACCCTCATGGAATGGGAAAGAGCACACTTAAAGAGATAAGTGAAGTAGCAATTGAAAATATTGCCATCATACAGAAGCTCGACGGAAAACCTTGTGAAGATAGGTACTACCGATGGAGCTCTTCTAAGGATTGCCGGTCCACAATTGAAGCTAAACTATCTCGGGGCCAATTCTCATTCGATGTTTCATGGTTGCTGGTTGCATCTACTTTGAAAGGAGTTGGATTTGACATAAGATCAATGCAAAACAAGATGGTGTATCGAATTTTAGACGGTGAAGATACGTGTTCCTTGGGATCTGATAAGATTGTAAATACTATCAATTTCCGAAGAGAGGATGGAGTTTTGAGACCCAATAGCACAAATTTTGTCCCAGAGGTTCCGGTAGAAACATTTGCTCCAGCCAATATCATCGAGGTGGAACCCCTTCATGATCTACAGGAAGATGGATTATGTAATTCGTCACTGTACGATCTCATGGGTTTGCGGCGCTCCAAACGTCGGAATGTACAACCTGAACGTTTTGTCAGCTATGGTCCTTCAAAGGCAAAATCTTGCACAGTTCGAACAGAGACAGACAGGATAAAAAGATGGAATGAAGTGAAAACACAATCCTTAATATCTTGTCAGGCTGATATTGATTGTTTAATACATACACTCTGTTTAGGAAAGGAAATAGGAAATGAAAAGATAGTTCGTCCTAGTCCGATTGATTCTGCTAGGAATTTTTTAGCAACCCAAAGCAAGATTACATCAAGGGAGGTAAAGGCAGGTGTAGCTAATAGAAGGTCACATCGAAATCAAGTTGCTGAGGATCACAAGAAGGCTAAGACTACTACTGCATGTAAAAGGCCAGCACAAGACAAGGGCTTGTGGAGACAAGTTCAACATTCCAGTTTTTCGTCAAAGCAAAACAAGAAAAGGGTTAAATCTTCTGCGAGCAACCGTGCTGCTTTGACCCCCAATACTTGCTCAGTTATTCCTCTGCCACCTAAAAATGATCCCATGTCATGTCAACAGGATCGTCCCCGTGACAATGTTCTTTCGACTCATCAAGGAAGGATAGGTAGGCAATCTTCTAAGAGTGTTGTCAGAAGTGGCCCAGCTGCAATACAAAGAAAGAATATGTCCGGGAGAAAACATAGGGATTTCGAAGATAGGTTGAAGGAGAAAGGTTCATATAAAGAACTTAAAAGTAGAAGCTCTTATTTTTGCTTAAAAAGGAAAAGGTCTTATGATGCAAGAACTTACAGACAGAATTTTTTTAGTTCAATTGAGTACAAGGAAGTGATAGAAAGGTGCATGAAGAGCATAGAACCAGAGATCAAGGAACCTCAACCTCCTTCTGTTTCTCAATGGGAAGCAATCCGTGCAGTAATCCCTTCTGACCAAAGGAGGGTGTTAACTTGGACACCACCTGTTAATGATCAGGTAGAAAGCCCAGAGCTTGAAAATTTGTGGAAAGAGATGGAAGCTTCAAGAAATGCAGTTCATTTTCTTGAAGAAAATCAGAGTAATGTTGTAGAGTTTTGCAATGAGGTAGTGGACAAATCCAGTGAAGGTGACGGACAATCATGCCAACACGAATACAAAATGGATGAAGAAATTGGGATTATTTGTCAATTATGCAGCTTTGTGAGCACTGAAATAAGATATGTCTCACCACCCTTTTTGCAGAGCATGGGTAGGTTCAGAAACAAGGAGCCATATGATGAGAACAAGTTGGGGAGCAGGCACACCAATTATCTGGACTTGGATCTTTTTTGCAGTCCTTCCTCCTCAAGGGTCCTGTCCTTAAAAGAGAATAATGTTTGGTCCCTGATACCGGACTTCAGAAACAAATTGCACATCCACCAACAGAAAGCTTTTGAGTTCCTATGGAGAAACATTGCTGGGTCTTTGATGCCAGCAGATATTGAAGTTGCACCGGGGAGAACAGGTGGTTGTGTAATCTCTCATTCTCCAGGAGCCGGGAAAACTTTGCTTGTGATCTCATTCCTTGTCAGTTACTTGAGGTTATTTCCTGGAAAACGTCCATTGATCCTTGCTCCGAAGACCACACTTTATACTTGGTGCAAAGAAATCGAGAAGTGGGAGGTCTCTATTCCGGTTTATCAGATCCATACGAGGGGAAGCTACAGGAATGTTTTCAAGAGTCAGACAGTAGGAGAATCACTAGGGGAAAAAAAACTAAACAAAGATGTGATGCATATAATAGATTGCCTGGAAAAATTGCGAAAGTGGCATGAGCATCCTAGTATCCTCCTTATGGGCTATACCTCTTTTTTCTCCTTGATGCGAGAGAAGTCAAAGTTGGAACACTGGAGATACATGGCGAGAGTTTTAGAGAAGAGTACAGGGATTCTGATCCTTGACGAAGGGCACAACCCCAGAAGCACCCGATCAATGTTAAGGAAAACTTTAATGAAAGTGAAAACGGAACAGAGAATTTTGCTCTCGGGAACTTTATTCCAGAATAATTTCGAAGAATATTTCAACACTCTTTGCTTGGCAAGACCAAGCTTTATCACTGAGGTGTTAAGGGAATTGGCCCCAACAGTGAAAATAAATCGAAATTGGAAGAAGAGCACAATTAGTTCCAAAGAGAATCTAGCGAGAAGATTCTTTGTAGAGAAGATTGCAGGGAGTATCTATTCAAAAGTAGATCAAGAAAGGAAGCAAGGTCTAACCTTTCTAAAGAAAATGACAAGTGGTTTTATAGATGTTTATGAATGTGGAACTTCAGGACTTCCAGGCTTGGAAAGTTACACGCTTTTGATGAAACCAACAGAGATGCAACAAGAGGTTCTATCAAAGCTGCAAAAGTATGTTTCAGACAAGAGGTTTCCTCTTGAGTTGGAGCTACTGATCACTGTTGGATCAATACATCCTTGGTTAATCACAACTTATGCATATGTTGGTAGATTCTTCAATCCGGATGAATTGGAAGAGCTTGAGAAACATAAACTGGACGTGACGAAAGGTTCAAAGGTGAGATTTGTCGTGAATCTCATGCACCGGTGCATCATCAAGGGAGAGAAGGTTCTGATCTTCTGCCATAACATCGCACCCATAAATTTATTTGTGGAGATATTTGAGCGGATATTTGGGTGGAATAAGGGTGATGAAGTGTTAGTCCTCCAAGGCGAGCAAGAATTATTCGAGCGAGCGAGGGTTATCGAAAAGTTCGAAGAACCAGGGGGTGTATCTCAAGTGCTGCTAGCCTCGAGTCAAGCTTGCAGCGAAGGAATCAGTTTGACAGCAGCTTCGCGGGTGGTTTTGTTGGATTCTGAGTGGAATCCTTCCAAGACAAAGCAGGCTGTTGCTCGAGCATACCGACCTGGTCAGGAGAGGGTGGTTTATGTGTATCAGCTTTTGGCGTCTGGGACGTTGGAGGAGGAGAAGTATGATAAGACCACGTTGAAGGAATGGGTGTCACGAATGATTTTTGTTGGGGCTGGTGTGGAGGATTCCTCTTGCAGGCAAGCAGAGAACATTGAGGATGAGGTGTTGAGGGAGATGGTGGAGGAAGATCAAGCCAGTTTATTCTATATGATAATGAAAGATGAGAAGCTTTCCCATGGTTCAGTCAGAGGTAAAGAAGAAGCTGCACTATTTTCACCCAAGTAA 4029 0.4212 MTMAKRHSYQCRHPIDAYPFEAFYHGSWRSIERVTVNDGGITMHFDHHGFEVEEKIPIVNLRIRSRKASISDCPCFLWPGVDICVLSTNPSEASSGEERLQPAWLDAKINSIERKPHESRCTCRFYVNFYKIHHPHGMGKSTLKEISEVAIENIAIIQKLDGKPCEDRYYRWSSSKDCRSTIEAKLSRGQFSFDVSWLLVASTLKGVGFDIRSMQNKMVYRILDGEDTCSLGSDKIVNTINFRREDGVLRPNSTNFVPEVPVETFAPANIIEVEPLHDLQEDGLCNSSLYDLMGLRRSKRRNVQPERFVSYGPSKAKSCTVRTETDRIKRWNEVKTQSLISCQADIDCLIHTLCLGKEIGNEKIVRPSPIDSARNFLATQSKITSREVKAGVANRRSHRNQVAEDHKKAKTTTACKRPAQDKGLWRQVQHSSFSSKQNKKRVKSSASNRAALTPNTCSVIPLPPKNDPMSCQQDRPRDNVLSTHQGRIGRQSSKSVVRSGPAAIQRKNMSGRKHRDFEDRLKEKGSYKELKSRSSYFCLKRKRSYDARTYRQNFFSSIEYKEVIERCMKSIEPEIKEPQPPSVSQWEAIRAVIPSDQRRVLTWTPPVNDQVESPELENLWKEMEASRNAVHFLEENQSNVVEFCNEVVDKSSEGDGQSCQHEYKMDEEIGIICQLCSFVSTEIRYVSPPFLQSMGRFRNKEPYDENKLGSRHTNYLDLDLFCSPSSSRVLSLKENNVWSLIPDFRNKLHIHQQKAFEFLWRNIAGSLMPADIEVAPGRTGGCVISHSPGAGKTLLVISFLVSYLRLFPGKRPLILAPKTTLYTWCKEIEKWEVSIPVYQIHTRGSYRNVFKSQTVGESLGEKKLNKDVMHIIDCLEKLRKWHEHPSILLMGYTSFFSLMREKSKLEHWRYMARVLEKSTGILILDEGHNPRSTRSMLRKTLMKVKTEQRILLSGTLFQNNFEEYFNTLCLARPSFITEVLRELAPTVKINRNWKKSTISSKENLARRFFVEKIAGSIYSKVDQERKQGLTFLKKMTSGFIDVYECGTSGLPGLESYTLLMKPTEMQQEVLSKLQKYVSDKRFPLELELLITVGSIHPWLITTYAYVGRFFNPDELEELEKHKLDVTKGSKVRFVVNLMHRCIIKGEKVLIFCHNIAPINLFVEIFERIFGWNKGDEVLVLQGEQELFERARVIEKFEEPGGVSQVLLASSQACSEGISLTAASRVVLLDSEWNPSKTKQAVARAYRPGQERVVYVYQLLASGTLEEEKYDKTTLKEWVSRMIFVGAGVEDSSCRQAENIEDEVLREMVEEDQASLFYMIMKDEKLSHGSVRGKEEAALFSPK* 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02238 1342 SMART ultradead3 744 979 IPR014001 -
Eupl05g02238 1342 Gene3D - 1053 1334 IPR027417 -
Eupl05g02238 1342 MobiDBLite consensus disorder prediction 425 455 - -
Eupl05g02238 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1133 1319 IPR001650 -
Eupl05g02238 1342 Pfam SNF2-related domain 757 978 IPR000330 GO:0005524|GO:0140658
Eupl05g02238 1342 SMART helicmild6 1163 1248 IPR001650 -
Eupl05g02238 1342 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1326 IPR044567 GO:0080188
Eupl05g02238 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1033 IPR027417 -
Eupl05g02238 1342 CDD SF2_C_SNF 1122 1259 - -
Eupl05g02238 1342 Pfam Helicase conserved C-terminal domain 1134 1247 IPR001650 -
Eupl05g02238 1342 MobiDBLite consensus disorder prediction 389 415 - -
Eupl05g02238 1342 MobiDBLite consensus disorder prediction 473 499 - -
Eupl05g02238 1342 Gene3D - 725 1008 IPR038718 -
Eupl05g02238 1342 MobiDBLite consensus disorder prediction 389 501 - -
Eupl05g02238 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 773 974 IPR014001 -
Eupl05g02238 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02238 Eupl-Chr5 49101668 49108659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02238 1122 1266 RAD5 or RAD16-like Gene Family AT5G43530 33.775 4.78e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl05g02238 SNF2_N 8.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02238 K10875 - ming:122075959 1372.07