Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02228 ATGGCCACCACCGACGTCTCTCCCAAATTCCAAAACCCCGATTTCCGACCCGTCCCACAACACCCACCAGATTTCAACCCCGATATCAACGTGTCGTCCCATGATGGCCTTGAATTCTGGCAATTCATGATCGCTGGCTCTATCGCCGGCTGCGTCGAACACACCGCGATGTTCCCTGTTGATACCCTCAAGACCCGTATGCAGGCCCTCGGATCATGTCCGGTTCAGACAGTCAGTCTCCAACAAGCCTTTCGATCGGTATTGAAGCTCGAAGGCCCGCTTGGATTTTACCGTGGAATCGGTGCAATGGGTCTTGGCGCTGGTCCCGCCCACGCGGTTTATTTTTCAGTTTACGAGCGCTGTAAGGAATTCTTCTCTGGTGGGAACCCTAATAATTCAATTGCTCATGCTGTTTCGGGGGTGTTTGCCACTGTTGCGAGCGACGCAGTTTTTACACCAATGGATATGGTGAAGCAGAGGTTGCAATTGAGTAGTAGTCCTTATGAAGGGGTTTTGGATTGTGTGAAGAGGGTGTTGAGGGAAGAGGGATTTGGGGCCTTTTACGCCTCCTATAGGACTACTGTATTGATGAATGCCCCGTTTACTGCTGTTCATTTTGCGACGTACGAGGCAGCGAAGAGGGGGTTAATGGAGGTATCACCGGAGAGTGTGAGCGATGAGCGGTTTGTAGTTCATGCCACGGCCGGAGCCGCTGCTGGAGCTTTGGCCGCTTCAGTGACAACTCCGCTTGATGTTGTCAAGACCCAGTTGCAGTGCCAGGGCGTCTGTGGATGTGACAGATTTACTAGCAGCTCAATCGGGGATGTTATTCGAACCATAGTGAGGAAGGATGGGTATGCAGGGCTCATTAGAGGATGGAAGCCCAGGATGCTCTTCCATGCCCCTGCCGCTGCAATCTGCTGGTCTACCTATGAAGCATCAAAAACCTTCTTCCAAGAACTCAATGGCAGCAGCACAGGCTCCTGA 987 0.5228 MATTDVSPKFQNPDFRPVPQHPPDFNPDINVSSHDGLEFWQFMIAGSIAGCVEHTAMFPVDTLKTRMQALGSCPVQTVSLQQAFRSVLKLEGPLGFYRGIGAMGLGAGPAHAVYFSVYERCKEFFSGGNPNNSIAHAVSGVFATVASDAVFTPMDMVKQRLQLSSSPYEGVLDCVKRVLREEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVSDERFVVHATAGAAAGALAASVTTPLDVVKTQLQCQGVCGCDRFTSSSIGDVIRTIVRKDGYAGLIRGWKPRMLFHAPAAAICWSTYEASKTFFQELNGSSTGS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02228 328 SUPERFAMILY Mitochondrial carrier 35 312 IPR023395 -
Eupl05g02228 328 Gene3D Mitochondrial carrier domain 22 166 IPR023395 -
Eupl05g02228 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 215 IPR018108 -
Eupl05g02228 328 MobiDBLite consensus disorder prediction 1 27 - -
Eupl05g02228 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 37 124 IPR018108 -
Eupl05g02228 328 PRINTS Mitochondrial carrier protein signature 188 206 IPR002067 GO:0055085
Eupl05g02228 328 PRINTS Mitochondrial carrier protein signature 55 69 IPR002067 GO:0055085
Eupl05g02228 328 PRINTS Mitochondrial carrier protein signature 146 164 IPR002067 GO:0055085
Eupl05g02228 328 PRINTS Mitochondrial carrier protein signature 42 55 IPR002067 GO:0055085
Eupl05g02228 328 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Eupl05g02228 328 PANTHER MITOFERRIN-1-RELATED 32 320 - -
Eupl05g02228 328 FunFam Mitochondrial RNA-splicing protein MRS3 166 328 - -
Eupl05g02228 328 Gene3D Mitochondrial carrier domain 167 328 IPR023395 -
Eupl05g02228 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 317 IPR018108 -
Eupl05g02228 328 Pfam Mitochondrial carrier protein 132 218 IPR018108 -
Eupl05g02228 328 Pfam Mitochondrial carrier protein 37 127 IPR018108 -
Eupl05g02228 328 Pfam Mitochondrial carrier protein 227 320 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02228 Eupl-Chr5 49020622 49025396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02228 8 326 Chloroplast and Mitochondria Gene Families AT1G07030 74.688 5.94e-172 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02228 K15113 - nnu:104602520 550.051