Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02220 ATGGGAGGAAATTCGCCTTGCGCTTCCTGCAAGTTGTTGAGACGTCGCTGTGCCAAGGACTGCATTTTTGCCCCCTACTTCCCTTCCGATGACCCGCATAAATTCGCCATTGTTCACAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGTTACAGGAGCTGCCGATTCATCAGAGAGCCGACGCTGTGAGTAGCTTAGTCTATGAAGCAAACGCTAGAGTGCGAGACCCAGTATATGGATGCGTTGGGGCGATTTCCTACCTACAAAACCAAGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATCCTTTGTATCCAGATGCAGCAAGAGCCTGCGCTACCGACTCATCAAATAGACGACACAGATGAGAAATCATTTCTTCTTCACAATAACCTCAATGACCTTCCTCAATATCTCAACTTTGCCTCTTCTAGCAATGTAATTCAAGACCCTTTAAAGAGGGAGTCTCTTTGGACATGA 492 0.4654 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPALPTHQIDDTDEKSFLLHNNLNDLPQYLNFASSSNVIQDPLKRESLWT* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02220 163 Coils Coil 85 105 - -
Eupl05g02220 163 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Eupl05g02220 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 118 - -
Eupl05g02220 163 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02220 Eupl-Chr5 48906978 48908304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02220 3 163 AS2 family AT2G30130 69.312 1.19e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl05g02220 LOB 9.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02220 - - nnu:104602524 317.005