Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02195 ATGATGCTGTCTCAGCCTCAGCTTCTTCAGCCCTCATGGCCATACTACAACATCATAGACTCTTCTCTTGATGAATCTTGTCCATATGGTGTAGACATGGATTTCCATATGGGTGAGTGTGAGTTCTCTTCTTCAGTCACCACCACTGAGGATTCCTCTGACGTTTCTTCGATCCCGTATTTGTCGATCATGTACCCTGATGAGCTTCTCAATTTGCCTGTTTATGGTGATGATGATGTGCAAGTCATGTTCCCTCTGGAAATTGATTCACTAAACTTGGAGGAATTAATGGATCATACTTCAAATGATCAATTCTTGAGTGATGAGATCGACGATGTGTCTCAATGGATGGAGGGGAGTGAGTGCGGTCTTCCTTCGCAATTGCGACAGTATTCTGTTGAAGAAGAAGATGAAGAAAGCCTATGCCTGTCGATGAAATCTAGCGATGCATCTGTGGATTTAACATCAGTAGATGTAAATTCAGTACAACCATCGGTAGTCTTCCCTAGGGAAGACATGGAAATCGATAACCAATTGATCATTCCTCATCTTCTTAAGGCATATGGAGACGCCGTGGAGAATGAACAGGCAGAGCTGGCGGAGGTGATCTTGAAGCACCTAAGGGAGAAGGTTAGTCCAGCAGGAGCAACCATGGAGCGTCTTGCATATTACTTCTTCCAATCCTTGGACAAGCAACATGACTACCTAAAACAAGAATCGAGCAAGAACTACGAGGCAGCATTCAGGGCCTTCTACCAAATTTTTCCATATGGAAGGTTTGCTCACTTCACCGCAAATTTGGCAATCCTTGAATCTATCCCAGACGATGCCGAGACAATACATATCATTGACTTCGACATGGGTGAAGGTGTTCAATGGCCTCCCTTGATTGAGGTCATGGAATGCCGAAGAGAGGTACGATTGACATCGATAAAGTGGAAGAAGGACTGCAGTTCTGTTCCTCTCCACTGGAATTTTGAGGAGACAAAGAGGCGGCTCTACGATCACGCACAATCTTTGGGTCTGAAGTTGAAGGTCGAGGAGATGGACATGGAGGAGCTAGTGAGTGAGATAAAGAAGATGAAGAGAAGGGTTCGAGGGAAAGAATGGCTGGCCTTCAATTGCATGGTGGGTCTCCCACACATGGGGAGAGGAGGGAGGAGTAGAAAGAATATAATGGAGTTTCTAAATGTAGCTAAGGACTTGATCACCAACTCTAGTTGTAGCAGTAATAGTAATCTGGGTATTCTAACTTTTGGAGATGGAGATGGTGTGGAGGAGAGAATGAATAATTGTTGTGGGTTTGGGTCATTCTTTGACAAGTATTTGCTACACTTCCATGCCTTGTTTGAATCGATGGAATGGCATTTTCCTCCCCACCTTACAGAAGCAAAAATAGCAATGGAGTGTCTCTTTATGGCACCTTATGCATCTTCTCTTGCTTGTTTTCGCAAGTGGCAGGAAACTAGGGAAGGTTGTGCTTTTCAGTTAGGATTTGGGTTGGAGGGTTGCAGATTTAGCAGAGAGAACCTTTTGCAAGCTAAAGAAATGGTGAGAGAAGGGGAGAGTTTGTCTGGGGTGAGGGTTGAGGGGGAGAATGAGAATGAGATGGTCTTGGAATGGAGGGGGACTCCATTAGTGAGAGTTTCTACTTGGGGATAA 1662 0.4471 MMLSQPQLLQPSWPYYNIIDSSLDESCPYGVDMDFHMGECEFSSSVTTTEDSSDVSSIPYLSIMYPDELLNLPVYGDDDVQVMFPLEIDSLNLEELMDHTSNDQFLSDEIDDVSQWMEGSECGLPSQLRQYSVEEEDEESLCLSMKSSDASVDLTSVDVNSVQPSVVFPREDMEIDNQLIIPHLLKAYGDAVENEQAELAEVILKHLREKVSPAGATMERLAYYFFQSLDKQHDYLKQESSKNYEAAFRAFYQIFPYGRFAHFTANLAILESIPDDAETIHIIDFDMGEGVQWPPLIEVMECRREVRLTSIKWKKDCSSVPLHWNFEETKRRLYDHAQSLGLKLKVEEMDMEELVSEIKKMKRRVRGKEWLAFNCMVGLPHMGRGGRSRKNIMEFLNVAKDLITNSSCSSNSNLGILTFGDGDGVEERMNNCCGFGSFFDKYLLHFHALFESMEWHFPPHLTEAKIAMECLFMAPYASSLACFRKWQETREGCAFQLGFGLEGCRFSRENLLQAKEMVREGESLSGVRVEGENENEMVLEWRGTPLVRVSTWG* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02195 553 Pfam GRAS domain family 183 552 IPR005202 -
Eupl05g02195 553 Coils Coil 344 364 - -
Eupl05g02195 553 ProSiteProfiles GRAS family profile. 172 553 IPR005202 -
Eupl05g02195 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02195 Eupl-Chr5 48627266 48629164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02195 183 552 GRAS Transcription Factor Family AT1G66350 26.076 5.43e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Eupl05g02195 GRAS 2.2e-49 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02195 - - vvi:104880018 587.8