Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02183 ATGGATGCAACACCATCTCAAGTTTTCATGGTCTCTTCAGGCTTCCTTCCCACAGGTTCCTTAGTAGAGTCCTTGATTCACATCTCCAATGAAGTTTCTTCCATTGATAATCTTCCTTTCGTACAATCGCGAAACATCGCGACGATGATAAGGAGAATCAAGTTGCTTTCTTCGCTCTTCGAAGAGATTAGAGAAACAAGTAGCCCACTTCCACCATCATCAATACTATGTCTCACCGAGCTCTTCTCCGTGATTCGAAGAGTTAAGCTTTTGATACAAGACTGTAAGGAAGGGAGCTCTTTGTGGAACCTTGTACAGACGGAATTCATCTCAAAGCAATTTCATATGTTGGTGAAGGAAATGGGGAAGGCGCTCGATATTCTCCCATTGAGATTGCTCGACATAACTGCCGATGTTCGAGAGCAAGTCGAGCTTCTTCACAAGCAAACCAAAAGGGCAGATGTCTTTGATGATCCTGCAGATTGTCAAAGAAGAGAAGAGCTTCTCCAAGTTATGACCAACAACAATGAGAAGTACAGTAAGAAGAGGGGAATTATGGATTGCAATGAAGTTGAAGAGATTATGTGTGGGATTGGTTTGAGAACGACTTCCGATTACGACGAAGAAATTTCGAGACTAGAGGCAGAAGTTCAGAAGCAAGCAGGAACCGGTGGTCTTGTCGTCGTCTCCAATATCAACAATCTTGTCTCTCTTGTTTCATTTTCGAAATCTATGATATTCGGGAACGAACGAAATGATAAAAACCAATCCATGGAGCAACCTTCCGCGGCGCTGCATAGGAATCACGACCGATCTTCGTCTTCACATCAATCCATGGTTCTCAACATCCCCGATGAGTTCCGGTGTCCAATTTCACTTGACTTGATGAAAGATCCTGTGATTGTAGCATCTGGTCATACCTATGATCGGAATTCGATTGCTCAGTGGATCAATTCCGGGCACCACACCTGTCCAAAGAGTGGGCAGAAACTAATTCACATGGCACTCATACCAAATTATTCACTCAAGAGCTTAGTTCATCAATGGTGTCAAGACAACAATGTCCAACTAAGTGAATCCTCTTCTCCCTCGGACTTGGAGAGAAGTAGTAGTAGAAGAAACTTATTATCAGAGAAGGCCATGGATCACATCTCTGCTACAAAAGCTGCTATGGATGCCGTCAAGATGACAGCAGAATTTCTAGTGGGAAAACTTGCAACTGGGTCTACTGTGATTCAGAGGCAAGCAGGTTACGAACTTCGATTACTAGCGAAAACAGGAATGGACAATCGTCGGATAATCGCCGAGGCAGGTGCTATCCCTTTTTTAGTTACATTATTACTTGCCCATGATCCAAGAACCCAAGAGAACGCTGTCACTGCCTTGCTGAACCTCTCAATTTTTGACAACAATAAGGTTCTTATAATGGCAGCTGGTGCAATTGACAACATCATAGAGGTTTTGCAATCTGGAAAGACCATGGAAGCAAGGGAGAATGCAGCAGCAGCAATCTTCAGCTTGTCGATGATTGATGATTGCAAGGTGACAATCGGGGCCCGCCCAAGAGCTATCCCAGCTCTGGTGGGGCTATTGAGGGAAGGGACTACTGTTGGGAAAAGGGATGCTGCGACAGCACTCTTCAACCTTGCTGTCTACAGTGCTAATAAGGCAAGTGTGGTGGTTGCAGGTGCAGTTCCTTTGCTTATCGAATTGTTGATGGATGACAAAGCAGGAATCACAGATGACGCCTTGGCTGTACTGGCTCTCCTGTCTGGGTGTGGAGAAGGGTTGGAAGAGATAAGAGAGAACAGGGTGGTGGTGCCTCTTCTTATTGATTTATTGAGATTTGGTTCTCCAAAAGGGAAGGAGAATTCTATAACTCTACTGTTGGGATTGTGCAAGAATGGAGGAGAGGAATTGGCGAGGCGTTTGTTGATAAATCCGCATAGTATTCCTTCACTTCAGAGCTTGGCTTCTGATGGGTCTCTCAAGGCTAGAAGGAAAGCTGATGCTCTTCTTAGATTACTGAACAGATACTGCTCTCAATCTCACCATCCTCTTTGA 2064 0.4457 MDATPSQVFMVSSGFLPTGSLVESLIHISNEVSSIDNLPFVQSRNIATMIRRIKLLSSLFEEIRETSSPLPPSSILCLTELFSVIRRVKLLIQDCKEGSSLWNLVQTEFISKQFHMLVKEMGKALDILPLRLLDITADVREQVELLHKQTKRADVFDDPADCQRREELLQVMTNNNEKYSKKRGIMDCNEVEEIMCGIGLRTTSDYDEEISRLEAEVQKQAGTGGLVVVSNINNLVSLVSFSKSMIFGNERNDKNQSMEQPSAALHRNHDRSSSSHQSMVLNIPDEFRCPISLDLMKDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQKLIHMALIPNYSLKSLVHQWCQDNNVQLSESSSPSDLERSSSRRNLLSEKAMDHISATKAAMDAVKMTAEFLVGKLATGSTVIQRQAGYELRLLAKTGMDNRRIIAEAGAIPFLVTLLLAHDPRTQENAVTALLNLSIFDNNKVLIMAAGAIDNIIEVLQSGKTMEARENAAAAIFSLSMIDDCKVTIGARPRAIPALVGLLREGTTVGKRDAATALFNLAVYSANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLSGCGEGLEEIRENRVVVPLLIDLLRFGSPKGKENSITLLLGLCKNGGEELARRLLINPHSIPSLQSLASDGSLKARRKADALLRLLNRYCSQSHHPL* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02183 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 362 IPR013083 -
Eupl05g02183 687 Gene3D - 588 685 IPR011989 -
Eupl05g02183 687 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Eupl05g02183 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Eupl05g02183 687 MobiDBLite consensus disorder prediction 252 277 - -
Eupl05g02183 687 SMART arm_5 508 551 IPR000225 GO:0005515
Eupl05g02183 687 SMART arm_5 593 634 IPR000225 GO:0005515
Eupl05g02183 687 SMART arm_5 427 467 IPR000225 GO:0005515
Eupl05g02183 687 SMART arm_5 552 592 IPR000225 GO:0005515
Eupl05g02183 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Eupl05g02183 687 Gene3D - 369 587 IPR011989 -
Eupl05g02183 687 SUPERFAMILY RING/U-box 270 357 - -
Eupl05g02183 687 Pfam Armadillo/beta-catenin-like repeat 429 466 IPR000225 GO:0005515
Eupl05g02183 687 SUPERFAMILY ARM repeat 399 676 IPR016024 -
Eupl05g02183 687 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Eupl05g02183 687 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Eupl05g02183 687 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Eupl05g02183 687 PANTHER U BOX DOMAIN-CONTAINING 44 677 - -
Eupl05g02183 687 CDD RING-Ubox_PUB 284 333 IPR045210 -
Eupl05g02183 687 FunFam RING-type E3 ubiquitin transferase 356 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02183 Eupl-Chr5 48477160 48479223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02183 19 682 U-box Gene Family AT3G46510 38.531 2.76e-133 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02183 - - vvi:100246680 1028.08