Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02181 ATGATCTTGAAGGAGGGAGTGATTGAAACCATGAAGGGTCACGACTCTCGGTCAACGTCTTCTTGTGCAGCTTGCAAGTTCCTGAAGAGGAGATGCACTCCCAATTGCATCTTCGCACCTTATTTCCGGTCCGATGAATTGCGGAAGTTTGCAAAAGTTCACAAGGTTTTCGGAGCAAGCAACGTGAGCAAGATCCTTAATGAGGTCCCTGAGGAGCGACGAGAGGATACGGTGAATTCATTGGCGTATGAGGCTGAGGCAAGGATCAGGGACCCTGTATACGGTTGTCTTGGAGCTCTGGCTCTTTTGCAGAGACAAAAGGTTCAGCTACAACATGACCTTGCCATTGCAAAAGCTCGTCTTGCTCACTGCACTACCAATCTTTCTCCTCCTCCTCCCCTCCTCTGCACCTACGACTATATCAATGTCACGCCATTCCCTGATTTTCCTGTTTCTGATGGAATTAGGACTGACAGCACTTCTGATTCCTTGGAATTTCAACAGTATGGATCAATACATGTTCCACCATAA 531 0.4746 MILKEGVIETMKGHDSRSTSSCAACKFLKRRCTPNCIFAPYFRSDELRKFAKVHKVFGASNVSKILNEVPEERREDTVNSLAYEAEARIRDPVYGCLGALALLQRQKVQLQHDLAIAKARLAHCTTNLSPPPPLLCTYDYINVTPFPDFPVSDGIRTDSTSDSLEFQQYGSIHVPP* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02181 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 126 - -
Eupl05g02181 176 Coils Coil 100 120 - -
Eupl05g02181 176 ProSiteProfiles LOB domain profile. 20 121 IPR004883 -
Eupl05g02181 176 Pfam Lateral organ boundaries (LOB) domain 21 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02181 Eupl-Chr5 48453139 48453671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02181 11 154 AS2 family AT3G11090 62.162 1.25e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl05g02181 LOB 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02181 - - qsu:112015546 213.772