Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02177 ATGCCGAAGTCTAAGCGGAATAGAACTGTCACTTTGTCGAAGACGAAGAAGAAGGGGAGAGAACACAAGGAATCGATCGTGAATTCTATAAGGCAGGCGGTAGACGACTACACCTCCATCTATGTTTTCTCTTTCGAAAACATGAGAAATCTCAAGTTCAAGGAGTTCAGAGAGCAGCTCAAGTCTTCTAGCAGATTTTTCCTTGGATCGAATAAAGTTATGCAGATTTCTCTGGGACGATCTGTTGCTGATGAAATCAAACCTGGCATTCACAAAGTCTCTAAGCTTCTGCGTGGAGATGCTGGGCTATGTTTAACTAATTTGCCGAAAGAAGAGGTTCAAAGGTTGTTTGGAGAATATGAAGAACATGACTTTGCAAGGACAGGAAGCACAGCTACGGAAAAGGTGGAGCTTAAAGAAGGTCCTCTAGATGAGTTCACACACGAGATGGAACCCTTTTTGCGGAAGCAAGGGATGCCTGTTCGATTGAACAAAGGTGTGGTGGAGCTCGTTTCTGACTTTGTTGTGTGTGAAGAAGGAAACTCTTTATCGCCTGAATCAGCTCGTATACTGGGATACTATTGCTGGGTCATACTGTGCACACCTCACGTCCATCATGGAGGATTATCATTAGGGCCCTGTGTGGGATATCTATCCACCCGAAAAGCTCGAGACAATCACATGATCCTAGCCATCTGA 699 0.4464 MPKSKRNRTVTLSKTKKKGREHKESIVNSIRQAVDDYTSIYVFSFENMRNLKFKEFREQLKSSSRFFLGSNKVMQISLGRSVADEIKPGIHKVSKLLRGDAGLCLTNLPKEEVQRLFGEYEEHDFARTGSTATEKVELKEGPLDEFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGNSLSPESARILGYYCWVILCTPHVHHGGLSLGPCVGYLSTRKARDNHMILAI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02177 232 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 191 - -
Eupl05g02177 232 Gene3D - 30 124 IPR043141 -
Eupl05g02177 232 Pfam Ribosomal protein L10 19 120 IPR001790 -
Eupl05g02177 232 Pfam Insertion domain in 60S ribosomal protein L10P 126 192 IPR040637 -
Eupl05g02177 232 MobiDBLite consensus disorder prediction 1 16 - -
Eupl05g02177 232 SUPERFAMILY Ribosomal protein L10-like 20 142 IPR043141 -
Eupl05g02177 232 FunFam Ribosome assembly factor mrt4 125 195 - -
Eupl05g02177 232 MobiDBLite consensus disorder prediction 1 23 - -
Eupl05g02177 232 FunFam Ribosome assembly factor mrt4 29 129 - -
Eupl05g02177 232 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Eupl05g02177 232 Gene3D - 125 191 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02177 Eupl-Chr5 48387919 48398857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02177 32 192 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 24.848 2.34e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02177 K14815 - msin:131253388 349.362