Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02168 ATGGACTACTTTCCCTGCAAACCCTCGTCAGCTGCTTCTATAGTAATGGCCAACAACAAGGAGAAGAAGAAGAGTGGGAAGAGAAGTAAAGGGGTGAAGCTCTCGACAGACCCACAAAGCGTCGCGGCTCGAGAGAGAAGGCATCGTATCAGTGACAGGTTCAAGATCTTGCAGAGTTTAGTCCCTGGTGGGACCAAGATGGACACTGTTTCCATGTTAGAGGAAGCCATCCACTATGTTAAGTTCCTTAAGGCCCAGATATGGCTTCATCAAGCAATGATGAACTTCATCGACGACGATGATCCATCTCTCTTCTTTCCATCAAATACGTCTCTCTCTCCTCAAGAATCACTCTATCCATCACCCTTACCTGCACTGCCACCACCACCACCAACATTGCCACCATATAGTTATCAAGGAGATGAAACCATGTTGTCTCATATGTCCATTAACTACTAG 459 0.4641 MDYFPCKPSSAASIVMANNKEKKKSGKRSKGVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKFLKAQIWLHQAMMNFIDDDDPSLFFPSNTSLSPQESLYPSPLPALPPPPPTLPPYSYQGDETMLSHMSINY* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02168 152 FunFam Transcription factor LAX PANICLE 37 100 - -
Eupl05g02168 152 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 92 IPR036638 GO:0046983
Eupl05g02168 152 CDD bHLH_AtIND_like 35 93 - -
Eupl05g02168 152 Gene3D - 37 97 IPR036638 GO:0046983
Eupl05g02168 152 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Eupl05g02168 152 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 133 IPR045843 GO:0003700|GO:0006355
Eupl05g02168 152 MobiDBLite consensus disorder prediction 19 41 - -
Eupl05g02168 152 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Eupl05g02168 152 SMART finulus 40 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02168 Eupl-Chr5 48308580 48309059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02168 28 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 66.667 4.93e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g02168 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02168 - - nnu:104602697 168.703