Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02167 ATGGCCTCTCAAGACTCTCAACCCTTTCATTGGCACTACGCCGAACTCGACGACAAGAACTTCCAAGTCCACGGCCGAAGCCTCCTCCTTATAGTCATCCTCTTCTCTGTTCTCCTCTTCTTCACCCTCTTATGCCTCTATATCAGATGGGTCTGTCGATTTCGTCGCCTCTCCGCCACTACTGTCGCTGCCATCTCTAGCACCACCCCACATCCGCCCGCGCCACCGGATCGTTCAGTGGGTCTCGACCCCGCCACCATCGATAGCTTGCCAATCTTTCTACATCGCTCATCGCCATCGACCACCACTTCGGACGAACCCCAGTGCTCTATATGCCTTACTACATTCCAAGACGAAGAGAAGGTTAAGGTCTTGCCTGACTGTCACCACGCTTATCACCCCGGTGTGCGTCGACAAGTGGCTCAGTAA 429 0.5431 MASQDSQPFHWHYAELDDKNFQVHGRSLLLIVILFSVLLFFTLLCLYIRWVCRFRRLSATTVAAISSTTPHPPAPPDRSVGLDPATIDSLPIFLHRSSPSTTTSDEPQCSICLTTFQDEEKVKVLPDCHHAYHPGVRRQVAQ* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02167 142 SUPERFAMILY RING/U-box 102 133 - -
Eupl05g02167 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 133 - -
Eupl05g02167 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 140 IPR013083 -
Eupl05g02167 142 Pfam RING-like zinc finger 108 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02167 Eupl-Chr5 48298326 48298996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02167 4 133 C3H Transcription Factor Family AT3G11110 42.537 3.82e-25 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02167 - - ming:122087401 171.4