LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g02165	ATGTCTGGTCAGAGCTCTGATCTATTGACACGGATGATCTCGTTTATCAATTCTTACAATGGGAAGCTTATGCTTGCTGCCATTATATCTCTACTCGTAATTTCCTTCGTTTTGCTACTCCACATCTACGCTAGCTGGTTCCTCGGACAATCCCATCACAGACCTAGACGGTCAGTGTCTACATCAAATATATGTTCATCAGCTTATGATTACGATTACATCATGGACGGTCTAGATGTTTCAATCATCGCTTCACTCCCTATCTTTGTCTACAAATCTGATGATTACAAGAAGGGATTGGAGTGTACAATTTGCTTGAGTGTATTTGAGAATGATGAGATGGGGAGGAATCTACCCAAGTGCCAACATTCATTTCATGTTGAGTGTATAGACATTTGGTTACAGTCGCATTCGAGCTGCCCGATTTGCAGAGCTCCGGTGGGGTTGGCGATGGAGAAGAGCCAAGAATCATCAGAGACGATCTCTAGTGAGTGCGAGTCGGGTATTGTGCGTGAAAACTCTAGTTTGGAGCTTCGGATGGAAATGCCACCGGATTCAAGTTTAGAGTGTCAACTACCGAAACATCCAACGGTCAATAGCCTAAAGAGAATGTTGAGCAGGAATAGATCAGAGCACAAGGTGTTTCCATCCTCTACTGTGAATGAGTTGAATGTTTGA	678	0.4336	MSGQSSDLLTRMISFINSYNGKLMLAAIISLLVISFVLLLHIYASWFLGQSHHRPRRSVSTSNICSSAYDYDYIMDGLDVSIIASLPIFVYKSDDYKKGLECTICLSVFENDEMGRNLPKCQHSFHVECIDIWLQSHSSCPICRAPVGLAMEKSQESSETISSECESGIVRENSSLELRMEMPPDSSLECQLPKHPTVNSLKRMLSRNRSEHKVFPSSTVNELNV*	226

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g02165	225	ProSiteProfiles	Zinc finger RING-type profile.	102	144	IPR001841	-
	Eupl05g02165	225	FunFam	E3 ubiquitin-protein ligase ATL6	66	149	-	-
	Eupl05g02165	225	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	78	165	IPR013083	-
	Eupl05g02165	225	Pfam	Ring finger domain	101	144	IPR001841	-
	Eupl05g02165	225	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	23	218	-	-
	Eupl05g02165	225	SUPERFAMILY	RING/U-box	82	150	-	-
	Eupl05g02165	225	SMART	ring_2	102	143	IPR001841	-
	Eupl05g02165	225	CDD	RING-H2_EL5-like	101	144	-	-

Showing 1 to 8 of 8 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g02165	Eupl-Chr5	48279622	48280299	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g02165	18	145	Rapid Response to Elicitors	AT3G16720	41.304	5.57e-31	114

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g02165	-		-	nnu:104602553	208.764

Showing 1 to 1 of 1 entries