Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02165 ATGTCTGGTCAGAGCTCTGATCTATTGACACGGATGATCTCGTTTATCAATTCTTACAATGGGAAGCTTATGCTTGCTGCCATTATATCTCTACTCGTAATTTCCTTCGTTTTGCTACTCCACATCTACGCTAGCTGGTTCCTCGGACAATCCCATCACAGACCTAGACGGTCAGTGTCTACATCAAATATATGTTCATCAGCTTATGATTACGATTACATCATGGACGGTCTAGATGTTTCAATCATCGCTTCACTCCCTATCTTTGTCTACAAATCTGATGATTACAAGAAGGGATTGGAGTGTACAATTTGCTTGAGTGTATTTGAGAATGATGAGATGGGGAGGAATCTACCCAAGTGCCAACATTCATTTCATGTTGAGTGTATAGACATTTGGTTACAGTCGCATTCGAGCTGCCCGATTTGCAGAGCTCCGGTGGGGTTGGCGATGGAGAAGAGCCAAGAATCATCAGAGACGATCTCTAGTGAGTGCGAGTCGGGTATTGTGCGTGAAAACTCTAGTTTGGAGCTTCGGATGGAAATGCCACCGGATTCAAGTTTAGAGTGTCAACTACCGAAACATCCAACGGTCAATAGCCTAAAGAGAATGTTGAGCAGGAATAGATCAGAGCACAAGGTGTTTCCATCCTCTACTGTGAATGAGTTGAATGTTTGA 678 0.4336 MSGQSSDLLTRMISFINSYNGKLMLAAIISLLVISFVLLLHIYASWFLGQSHHRPRRSVSTSNICSSAYDYDYIMDGLDVSIIASLPIFVYKSDDYKKGLECTICLSVFENDEMGRNLPKCQHSFHVECIDIWLQSHSSCPICRAPVGLAMEKSQESSETISSECESGIVRENSSLELRMEMPPDSSLECQLPKHPTVNSLKRMLSRNRSEHKVFPSSTVNELNV* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02165 225 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Eupl05g02165 225 FunFam E3 ubiquitin-protein ligase ATL6 66 149 - -
Eupl05g02165 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Eupl05g02165 225 Pfam Ring finger domain 101 144 IPR001841 -
Eupl05g02165 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 218 - -
Eupl05g02165 225 SUPERFAMILY RING/U-box 82 150 - -
Eupl05g02165 225 SMART ring_2 102 143 IPR001841 -
Eupl05g02165 225 CDD RING-H2_EL5-like 101 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02165 Eupl-Chr5 48279622 48280299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02165 18 145 Rapid Response to Elicitors AT3G16720 41.304 5.57e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02165 - - nnu:104602553 208.764