Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02161 ATGATGGGTATGAACGGTGCAGATCGAATCAAAGGGTCGTGGAGCCCCGACGAGGATGCGAAGCTGAGAAAGCTAGTAGAGCAGCATGGGGCGCGTAACTGGTCCCTCATAAGTTCAGGGATACCAGGCCGATCGGGGAAGTCGTGTAGATTAAGGTGGTGTAACCAGCTGAGCCCGTTAGTCCAACACCGTCCTTTCACCCCCACAGAGGACGCTCTTATCGTCAAGGCTCACGCTACCCATGGCAACAAGTGGGCCACTATATCGCGCCTCCTCCCCGGCCGCACAGACAACGCTGTCAAGAACCATTGGAACTCCACCCTCCGTCGCCGATTCGCCTCCGAGTCGTCTTCAGCCTCGTCCGATCCTGAATCCGAGTCTGACTCGCTCCGTAAGCGTCCTTGTCTTAGAGTGTCGTTCGGAAACGATGGGCACGAGGACGATGAAGGGTCAGCCGAGCCGGCGACGTCGCTCACATTGTCTCCTCCGGGAGAGAGTCTGCCTCCCCCGCCGGCGTACGTTAGGGTCGAAGAGGAGGAAGTGGTGGAAGTTAAGATGGATGTGAAGGGGAGTGAAGTGCGCACCCCTAGGGGTGAGGAAGGGGATGAGAAAGAGAGATGTGCGGTGGAGATGAAAGAGATGTGTTTGATGACTATAATGCACCGTATGATCGCGGAGGAGGTTAGAAAATACATCAATAGATTAGAGACTCCGAAAGGTCTTGGTGTGGGTTTCGAGTCTGAAACCGAGAAGAATTCGAAGTCGAAACCGCTCAGAAGTTAG 783 0.5504 MMGMNGADRIKGSWSPDEDAKLRKLVEQHGARNWSLISSGIPGRSGKSCRLRWCNQLSPLVQHRPFTPTEDALIVKAHATHGNKWATISRLLPGRTDNAVKNHWNSTLRRRFASESSSASSDPESESDSLRKRPCLRVSFGNDGHEDDEGSAEPATSLTLSPPGESLPPPPAYVRVEEEEVVEVKMDVKGSEVRTPRGEEGDEKERCAVEMKEMCLMTIMHRMIAEEVRKYINRLETPKGLGVGFESETEKNSKSKPLRS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02161 260 CDD SANT 65 108 IPR001005 -
Eupl05g02161 260 Gene3D - 64 134 - -
Eupl05g02161 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Eupl05g02161 260 MobiDBLite consensus disorder prediction 240 260 - -
Eupl05g02161 260 SMART sant 10 59 IPR001005 -
Eupl05g02161 260 SMART sant 62 110 IPR001005 -
Eupl05g02161 260 PANTHER MYB PROTEIN-RELATED 11 128 - -
Eupl05g02161 260 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Eupl05g02161 260 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Eupl05g02161 260 MobiDBLite consensus disorder prediction 125 152 - -
Eupl05g02161 260 FunFam MYB transcription factor 11 62 - -
Eupl05g02161 260 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Eupl05g02161 260 CDD SANT 13 55 IPR001005 -
Eupl05g02161 260 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Eupl05g02161 260 Gene3D - 10 62 - -
Eupl05g02161 260 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Eupl05g02161 260 MobiDBLite consensus disorder prediction 111 171 - -
Eupl05g02161 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02161 Eupl-Chr5 48203859 48205202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02161 7 162 MYB Transcription Factor Family AT3G50060 58.333 1.94e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g02161 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02161 - - nnu:104594947 318.161