Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02160 ATGCAGATGTTAAGATTTGAGAATTGGTGTTTTTCCATGGAGAAATGCTTTCATCCTGGTTGGTCTGACGAGTCACATTTGATTCACTCCCATGAACTTAACAGAAGCTCCTTTATCCTTCCATGGCCGCCTCACGCATCAGCATCATTTCATGTTCATGGGTTTCCTTCGTTTTCTACATCGGTCGACGGGATTGCAGAAGATCGAGCTGTGACTGCTTCTAAGAGCCACAGCCAGGCTGAGAAGCGGCGTAGGGAGAGGATCAATACTCATCTTTCTACTCTCAGACGTCTAATTCCTCGGTCTGATAAGATGGACAAGGCTGCTTTGTTAGGCAGTGTGGTTGATCATGTCAAGGAGCTAAAGAGAAAAGCAATTGAGATTCGTCAAGTGTTCACAATCCCAACCGAAGTCGACGAAGTGACCGTCGATTGTGATGGAATAAATGTAGACCCCACCAACAAAAATAATCTCTTCCTCAAGGCTTCCGTTTGTTGCGATGATCGACCTGAACTGTTCCCCGATCTCATTCAAGCCCTCAAAGGCCTGAAACTAAGAACAGTTAGAGCAGACATGGCTACACTAGGTGGAAGAATTATAAACGATTTGATCCTTTGCACTAAAGACAGTAAAGAGAGTGTGTGTTTAAGCTCTCTTAAGCAGTCGCTTAAAGTGGTTTTGAGTAGAGTTGCTTCATCATCGTCTGCGTCGTCGAGTGAGTTTTCACGCAAGAGGCAAAGGATCTTATTGCCATCACATTCCTCACACTTGTCTGTATGA 780 0.4462 MQMLRFENWCFSMEKCFHPGWSDESHLIHSHELNRSSFILPWPPHASASFHVHGFPSFSTSVDGIAEDRAVTASKSHSQAEKRRRERINTHLSTLRRLIPRSDKMDKAALLGSVVDHVKELKRKAIEIRQVFTIPTEVDEVTVDCDGINVDPTNKNNLFLKASVCCDDRPELFPDLIQALKGLKLRTVRADMATLGGRIINDLILCTKDSKESVCLSSLKQSLKVVLSRVASSSSASSSEFSRKRQRILLPSHSSHLSV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02160 259 CDD bHLH_AtAIG1_like 67 144 - -
Eupl05g02160 259 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
Eupl05g02160 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 125 IPR036638 GO:0046983
Eupl05g02160 259 SMART finulus 78 127 IPR011598 GO:0046983
Eupl05g02160 259 PANTHER TRANSCRIPTION FACTOR BHLH30 61 254 IPR045847 GO:0003700|GO:0006355
Eupl05g02160 259 Gene3D - 66 130 IPR036638 GO:0046983
Eupl05g02160 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02160 Eupl-Chr5 48190148 48191948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02160 46 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.700 2.45e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g02160 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02160 - - nnu:104594946 290.426