Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02128 ATGTGCAGTGGTTCGAAGAGGAAACTAGCTCCCACCGATTTAGTTATGGAGGGCGAATTCCAGAAGCAAAAAGAGGGGTTCTTCAGTGATCGTTCGATTTTGCTCGAATTTTCTGCCGCGGATGATCTTGTTGGTTTCCAACGTGCGGTGGAAGAAGAGGGTTTTGATGTTGATGAGGCAAGCTTCTGGTACGGGAGAGCGATCGGGTTGAGGAAGATGGGTTTTGAGGAAAGGACGCCCCTCATGATCGCTGCCATGTTTGGGAGCTCCGAGGTATTGAAGTATATACTCGCAACCGGACGGGTTGATGTCAACCGTGCCTGTCGTTTGGATGGGGCGACCGCCCTTCACTGTGCTGTTGCTGGTGGGTCTGCAGCTTCTCCGGAGATTGTCAAGCTCTTGCTTGATTCTTCTGCAGATGTTAATTCCGTTGACGCGAATGGAAACAGACCCGGAGACCTGATCGCTCCGGTTTTAAAGCCCTATTGTAATTCGACGAAGAAGATACTTGAGACGATGCTAAAAGGCGGTAGTAGTGTTGGGAAAGGATGGTTTTGTTCTGATGAAATGGTTAACCAACCCGAAGAACAGCAACAACAGGTGCAAACCCCTCAAAAAGATGGGACTGAGAAGAAAGAATATCCGATCGATCTGTCGATGCCCGATATAAAGAATGGGATGTATGGGACGGATGAATTCAGGATGTACTCATTTAAGGTGAAACCTTGCTCGAGGGCATACTCCCATGACTGGACCGAGTGCCCTTTTGTCCATCCAGGGGAGAATGCGAGGCGACGTGATCCACGCAAGTATCACTACAGCTGTGTCCCCTGCCCCGAATTCCGAAAGGGAACATGCCGGCAAGGGGATGCATGTGATTATGCGCATGGTGTGTTCGAATGCTGGCTCCACCCAGCACAGTATCGAACTCGGCTTTGCAAGGATGAAACGGGCTGCACCCGAAGGGTCTGCTTCTTTGCTCACAAGCCTGAAGAGCTGCGCCCCCTGTATGCATCCACGGGATCGGCGGTGCCCTCACCTAGATCTTCTTCTGCGAACATGTCTTCGCTGGACATGTCTGCGATGAGCCCCCTGGCTCTTGGCTCACCGTCGTACCTGATGCTGCCTAATTCGACGCCTCCCATGTCACCTTCAGTAGCCACATCCTCTCCCATGGGGGGTTCACTGTGGCAGAACCAGTCAAGCGTCATCCCACCTACCTTGCAGCTACCTGGTAGCAGGCTGAAGGCTGCACTTAGTGCTAGAGATATGGATTTAGACATGGAGTTGCTTCGACTAGAAGGTCATAATCAGCAGCAATTGATGGATGAGATCTCAAATCTCTCCTCCCAGTCAAGCTGGGCCAACACCCTGGCCACTGCTGCAGCCATTGCGGCGTCACCTGGCGGCCGGACTGGGGAATACAATCGGTTTGGTGGGGTGAAGCCTACTAACCTTGAAGATGTGTTTGGATCTCTCGATCCTTCTGTACTGTCTCAATTACAAGGACTCTCTTTGAAAGCTGCAGCATCCCAGATGCAATCTCCAACTGGAATTCAAATACGCCAGAACATGAACCAGCAGCTTCGTTCTAGCTACCCCACCAACCTGTCCTCCTCGCCTGTGAGGACACAATCGTCTTTCGGGCTCGACCCATCTGGGGCAGCAGCAGCAGCGGCAGTGGGGGTCATGAATTCAAGGTCCACTGCCTTTGCTAAGCGGAGCCAGAGCTTCATTGACCGGGGTGCGGGTAACCGTCATCCTGGGCTCCCGGCCTCAGATCCTTCTGCAAATGCTATGTCATCAACCCTTTATGATTGGGGCTCGCCGAATGGGAAATTGGACTGGGGTATTCAAGGAGAAGAGCTGAACAAGCTACGGAAGTCGGCATCGTTCGGTTTCCGAAACAGCAATGGCAGCAGTGGTGTCACAACGGCCACCGCCTCAATGGCTCCTACCCTTGATGAGCCGGATGTGTCTTGGGTGCAATCTCTGGTGAAGGATGTCCCTCCGGTGGAGAAGGGGCGATTCAGCGAGGAGCAGCAGCAGCAGCAGCAGTATCATCTCAACAGCGGGGGTTTGGAGATGATCTCACCATGGGTGGAGCAGTTGTACATGGAGCAGGAGCAGATGGTGGCTTAA 2142 0.5285 MCSGSKRKLAPTDLVMEGEFQKQKEGFFSDRSILLEFSAADDLVGFQRAVEEEGFDVDEASFWYGRAIGLRKMGFEERTPLMIAAMFGSSEVLKYILATGRVDVNRACRLDGATALHCAVAGGSAASPEIVKLLLDSSADVNSVDANGNRPGDLIAPVLKPYCNSTKKILETMLKGGSSVGKGWFCSDEMVNQPEEQQQQVQTPQKDGTEKKEYPIDLSMPDIKNGMYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACDYAHGVFECWLHPAQYRTRLCKDETGCTRRVCFFAHKPEELRPLYASTGSAVPSPRSSSANMSSLDMSAMSPLALGSPSYLMLPNSTPPMSPSVATSSPMGGSLWQNQSSVIPPTLQLPGSRLKAALSARDMDLDMELLRLEGHNQQQLMDEISNLSSQSSWANTLATAAAIAASPGGRTGEYNRFGGVKPTNLEDVFGSLDPSVLSQLQGLSLKAAASQMQSPTGIQIRQNMNQQLRSSYPTNLSSSPVRTQSSFGLDPSGAAAAAAVGVMNSRSTAFAKRSQSFIDRGAGNRHPGLPASDPSANAMSSTLYDWGSPNGKLDWGIQGEELNKLRKSASFGFRNSNGSSGVTTATASMAPTLDEPDVSWVQSLVKDVPPVEKGRFSEEQQQQQQYHLNSGGLEMISPWVEQLYMEQEQMVA* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02128 713 Gene3D - 273 335 - -
Eupl05g02128 713 PANTHER UNKEMPT FAMILY MEMBER 36 669 IPR045234 -
Eupl05g02128 713 MobiDBLite consensus disorder prediction 194 213 - -
Eupl05g02128 713 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Eupl05g02128 713 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Eupl05g02128 713 ProSiteProfiles Ankyrin repeat region circular profile. 76 100 - -
Eupl05g02128 713 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Eupl05g02128 713 Gene3D - 36 173 IPR036770 -
Eupl05g02128 713 Pfam Ankyrin repeats (3 copies) 72 145 IPR002110 GO:0005515
Eupl05g02128 713 SMART ANK_2a 111 143 IPR002110 GO:0005515
Eupl05g02128 713 SMART ANK_2a 76 106 IPR002110 GO:0005515
Eupl05g02128 713 SUPERFAMILY Ankyrin repeat 72 154 IPR036770 -
Eupl05g02128 713 ProSiteProfiles Ankyrin repeat profile. 76 100 IPR002110 GO:0005515
Eupl05g02128 713 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Eupl05g02128 713 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Eupl05g02128 713 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02128 Eupl-Chr5 47711608 47714736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02128 32 708 C2H2 Transcription Factor Family AT5G12850 39.335 5.57e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl05g02128 Ank_2 1.5e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02128 - - nnu:104602587 1008.05