Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02123 ATGGAAATGGCTTCGATTTCTTCGAGTCCGCGTACGGTAGAAGAGATCTTCAAGGATTACAGCGCTCGAAGGGCTGGGATCGTTCGAGCGCTAACCTACGATGTCGATGAGTTCTACGCGCTTTGTGATCCAGAGAAGGAGAATCTGTGTCTGTACGGACACCCGAGCGAGAGTTGGGAAGTCACTCTTCCAGCCGAAGAAGTTCCACCGGAGCTTCCAGAGCCGGCATTAGGGATCAATTTCGCTCGGGATGGGATGAACCGTAAGGACTGGCTTTCGCTGGTTGCTGTGCACAGCGATTCTTGGTTGCTCTCTGTGGCTTTCTATCTTGGGGCCCGCTTTAATCGCAATGAAAGGAAGCGCCTGTTTAGCTTGATCAATGATCTGCCCACAGTATTTGAAGTTGTAGCGGAGAGGAAGCTGGTAAAAGACAAACCCAGTGCTGATAGTGGAAGCAAATCCAGACTCAGCACAAAGAGATCGAATGATGGGCAGGTAAAAAACAATTCAAAACTGGCTGACGAGGGCTATGGGGAGGATGAAGACGAACACAGTGATACCCTTTGTGGGAGTTGCGGTGGCAATTACAATGCTGACGAGTTTTGGATTGGCTGCGACATCTGTGAGAGATGGTTCCATGGAAAGTGCGTGAAGATAACACCTGCGAAGGCGGAGAGTATAAAGCAGTACAAATGCCCTTCTTGCAGCATGAAGAGAGGTAGGCAGTAG 729 0.4993 MEMASISSSPRTVEEIFKDYSARRAGIVRALTYDVDEFYALCDPEKENLCLYGHPSESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARFNRNERKRLFSLINDLPTVFEVVAERKLVKDKPSADSGSKSRLSTKRSNDGQVKNNSKLADEGYGEDEDEHSDTLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMKRGRQ* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02123 242 PANTHER CPG BINDING PROTEIN 9 242 IPR045104 GO:0006355|GO:0042393
Eupl05g02123 242 MobiDBLite consensus disorder prediction 151 169 - -
Eupl05g02123 242 Pfam PHD-finger 189 237 IPR019787 -
Eupl05g02123 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 236 IPR013083 -
Eupl05g02123 242 MobiDBLite consensus disorder prediction 144 181 - -
Eupl05g02123 242 FunFam PHD finger alfin-like protein 181 237 - -
Eupl05g02123 242 Pfam Alfin 12 137 IPR021998 GO:0006355|GO:0042393
Eupl05g02123 242 CDD PHD_AL_plant 188 238 IPR044104 -
Eupl05g02123 242 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Eupl05g02123 242 SMART PHD_3 188 236 IPR001965 -
Eupl05g02123 242 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
Eupl05g02123 242 SUPERFAMILY FYVE/PHD zinc finger 177 239 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02123 Eupl-Chr5 47620113 47634965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02123 3 242 Alfin-like Transcription Factor Family AT5G05610 76.763 2.89e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Eupl05g02123 Alfin 2.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02123 K26274 - ming:122078129 475.707