Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02092 ATGTTGAGCTTTCTTTTAAATATCGTTAATTTCTGGGCAAACGGGTTCTTCGGGTTATTTCGATCAAGTAATGCAGCAGGCTCAAGTATTGCAGATTGTTCAGTCTCTAGGGCTTCGGTTTATCCGAGGGAATATGATGGTGCCTGCGTTCAAATGAGATTATCTTATAGTCCAGCTGCCCACTTATTTCTTTTTCTTGTTCAATGGACTGATTGTCACCTTGCTGGTGCCCTTGGATTGCTTAGAATCCTTATTTATAAGGCTTATGTGGATGGCAAGACCACTATGTCTGTTCATGAAAGGAAAGCTAGTATTAGAGAATTTTATGCTGTGATATTTCCTTCCTTATTGCAACTTCAAAGAGGAATCACTGATGTTGAAGATCGGAAACAGAGAGAAGTTTGTGCAACCAAATACAAAAAAAAGGATGAGTTAGAGAAGGGAAAACTCTCTGAACTTGATATAGAGAGGGAAGAGGAGTGTGGGATTTGCATGGAGATGAACAGCAAGGTCGTCTTGCCCAATTGCAACCACGCGCTATGTATGAAGTGCTATCGGGATTGGCGTGCACGGTCTCAGTCGTGCCCCTTCTGTAGGGATAGCATCAAAAGAGTGAACTCGGGTGACCTTTGGATCTACACAGACAGCCGTGAGATCAACGACATGTCGTCAATCTGCAGGGAGAACTCAAAGAGGCTGTTCATGTACATAGATAAGTTGCCTGTTATTGTTCCAGATCCTGTGTTTGTTCCCTATGATTCTCATATTAGGTAA 774 0.4238 MLSFLLNIVNFWANGFFGLFRSSNAAGSSIADCSVSRASVYPREYDGACVQMRLSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKAYVDGKTTMSVHERKASIREFYAVIFPSLLQLQRGITDVEDRKQREVCATKYKKKDELEKGKLSELDIEREEECGICMEMNSKVVLPNCNHALCMKCYRDWRARSQSCPFCRDSIKRVNSGDLWIYTDSREINDMSSICRENSKRLFMYIDKLPVIVPDPVFVPYDSHIR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02092 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Eupl05g02092 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Eupl05g02092 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 210 IPR013083 -
Eupl05g02092 257 FunFam RING/U-box superfamily protein 139 208 - -
Eupl05g02092 257 SUPERFAMILY RING/U-box 143 204 - -
Eupl05g02092 257 Pfam Zinc finger, C3HC4 type (RING finger) 158 205 - -
Eupl05g02092 257 PANTHER RING FINGER PROTEIN 41, 151 21 255 - -
Eupl05g02092 257 SMART ring_2 161 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02092 Eupl-Chr5 47129703 47133301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02092 109 203 C3H Transcription Factor Family AT5G01960 29.000 3.55e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02092 K25840 - nnu:104595016 391.349