Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02090 ATGAAGGCTGCCAAGGGGAAGGGGGCAGCAAAGAAGGACACAAAGGAAGTGTTGAAGCCTGTTGAGGACAGAAAGGTTGGGAAGCGCAAGGCTGCCATTAAAGCAGATAAGAGCAGCCAAAAACATGCCAAGAAGGGAAAATTGGCCAAGAAGGATCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTTTTTGTATTCCTAGAGGAGTTTAGAAAAACTTACAAGCTCGAGCATCCTAATGTGAAGGCCGTTTCAGCAGTTGGGAAGGCTGGAGGAGAGAAGTGGAAATCATTGTCTAGTGCTGAGAAAGCTCCATACGAAGCCAAAGCTGCAAAAAGGAAGACTGACTATGAAAAACTTATGTCAGCCTACAACAAGAAACAGGAAAGTACGGCTGATGATGCTGATGAGGAGTCTGACAAGTCAAAGTCCGAGGTTAGTGATGAAGACGACGAAGAAAGTGGGGAGGTAAATTTTCTAAGTTCTCATGTTATTGCTTGTATTGTGTTGTCCCATTTTTCATGA 525 0.4457 MKAAKGKGAAKKDTKEVLKPVEDRKVGKRKAAIKADKSSQKHAKKGKLAKKDPNKPKRPPSAFFVFLEEFRKTYKLEHPNVKAVSAVGKAGGEKWKSLSSAEKAPYEAKAAKRKTDYEKLMSAYNKKQESTADDADEESDKSKSEVSDEDDEESGEVNFLSSHVIACIVLSHFS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02090 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 125 IPR009071 -
Eupl05g02090 174 Coils Coil 125 145 - -
Eupl05g02090 174 Gene3D High mobility group box domain 37 142 IPR036910 -
Eupl05g02090 174 MobiDBLite consensus disorder prediction 88 157 - -
Eupl05g02090 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 154 IPR031061 -
Eupl05g02090 174 SMART hmgende2 55 126 IPR009071 -
Eupl05g02090 174 MobiDBLite consensus disorder prediction 1 39 - -
Eupl05g02090 174 MobiDBLite consensus disorder prediction 1 60 - -
Eupl05g02090 174 SUPERFAMILY HMG-box 43 129 IPR036910 -
Eupl05g02090 174 MobiDBLite consensus disorder prediction 106 142 - -
Eupl05g02090 174 CDD HMG-box_AtHMGB1-like 57 117 - -
Eupl05g02090 174 Pfam HMG (high mobility group) box 56 125 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02090 Eupl-Chr5 47088751 47093900 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl05g02090 HMG_box 6e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02090 K25507 - vvi:100246802 206.068