Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02089 ATGGGAACTCGGAGTTTTCTGTGGGATTTCACAAAGAAATCTTTAACTGCTGGACTGATAGGGCTCACCATTTCAGACCGATATGCTAGTATTGCTCCCGTGCGTGGTCTCTCCATGCATCCCACATTCAATCCTGGCACCAATACCTTTCTGGGATCATTGACAGATGACTGTGTTTTGGTGGAGAAATTTTGCCTTGAGAAGTACAAGTTTTCACATGGCGACGTGATAGTCTTTCGGTCCCCGAGTAACCACAAAGAGAAGAATATAAAGAGATTGATTGCCTTGCCAGGCGACTGGATCAGAGGCCCTCATTCATATGATACCTTGAAGATTCCAGAAGGGCATTGCTGGGTAGAAGGGGACAATTCAGCTTCTAGCTTGGATTCAAGATCTTTTGGCCCAATTCCATTGGGTTTAATTCAAGGGAGGGTGACCCATATAGTCTGGCCTCCTAAGAGAGTAGGTGAAGTGGAGAGAAGAGTGCCACAAGGGAGACTTCTGCCATACTGA 513 0.462 MGTRSFLWDFTKKSLTAGLIGLTISDRYASIAPVRGLSMHPTFNPGTNTFLGSLTDDCVLVEKFCLEKYKFSHGDVIVFRSPSNHKEKNIKRLIALPGDWIRGPHSYDTLKIPEGHCWVEGDNSASSLDSRSFGPIPLGLIQGRVTHIVWPPKRVGEVERRVPQGRLLPY* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02089 170 SUPERFAMILY LexA/Signal peptidase 31 158 IPR036286 -
Eupl05g02089 170 Pfam Signal peptidase, peptidase S26 9 102 IPR019533 GO:0004252|GO:0006465
Eupl05g02089 170 Pfam Signal peptidase, peptidase S26 110 150 IPR019533 GO:0004252|GO:0006465
Eupl05g02089 170 CDD S26_SPase_I 30 145 IPR019533 GO:0004252|GO:0006465
Eupl05g02089 170 FunFam Mitochondrial inner membrane protease subunit 25 163 - -
Eupl05g02089 170 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 168 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Eupl05g02089 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl05g02089 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl05g02089 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl05g02089 170 Gene3D Umud Fragment, subunit A 27 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02089 Eupl-Chr5 47064838 47076194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02089 39 151 MADS-box Gene Family AT1G29960 40.336 8.69e-22 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02089 K09648 - ming:122062773 303.138