Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02082 ATGAACCTTTGCTGCTTCGGTGCATTGAAATCGAGTAAGCGGGAGAATGTTCGCACTCTCGAACAGACAGCAGAGATCACTACCGACAAAGTGAGGGTCTTTTCTTATAACGCATTGAGATCTGCCACGGGGAACTTCCACCCTTCGAACAGACTAGGTCAAGGCGGCTTCGGAGTTGTCTATAGAGGAGTCTTAAGGGATGGAATCCCAGTTGCAGTTAAGTCTCTTTCTGCTGAATCTAAACAAGGAACACACGAGTTTTTGACTGAGATTGACATGATATCAAATGTTAGACATCCAAACCTGGTTCAACTCATTGGGTGTTGTATCGAGGGCAGTAATCGAATGTTGGTCTATGAGTATCTGGATAACAACAGCTTAGCAAGTGCTTTACTTGGTCCAAAGAGTAAGCAGATCGTGCTTGATTGGCCTAAAAGAGCTGCTATTTGCATAGGTACGGCTCAAGGGCTTGCATTTCTTCACAAGGATGCCAAACCACATATTGTCCACCGAGATATCAAGGCTAGTAATATACTTCTTGACAAAGACTTGAATCCAAAAATTGGAGATTTTGGGCTGGCAAAACTTTTTCCAGACAATGTTACTCATTTGAGTACACGAGTGGCAGGAACAACGGGTTATTTGGCACCTGAGTATGCGTTGTTAGGACAGCTGACAAAGAAGGTGGATATCTACAGTTTTGGGGTGCTTATACTTGAAACAATCAGTGGCAGAAGTAGTAGTAAGTCAGCATGGGGAGAGAATCTGATGTTTCTTGTGGAATGGGCATGGACACTGCGAGGTGAAGATAGGCTCTTGGACATTGTTGACCCGGAACTGTCTGAGTACCCAGAGGATGAGGTGTTGCGCTTCGTCAAGGTGGCACTCTTTTGCACGCAAGCGGCATCACACCAGAGGCCCTCCATGAAGCAGGTGGTTGAGATGCTTTCCAAAGAGATGAGCCTCGATGTGAAGGCGCTAACCCAGCCAGGTTTCAAGGACCGTGCTGCCAAATACTTTGGTGGTGGTAGTTCACAGGATAGCTCCTCTTCTCGGGTGCACCAAGGCAAAAAACCAATAAATCCATTTATTACTTCAGCACTTTTAAACAGCTCTTCCATAACCATGACACAGATGCAACCCAGGTGA 1149 0.4578 MNLCCFGALKSSKRENVRTLEQTAEITTDKVRVFSYNALRSATGNFHPSNRLGQGGFGVVYRGVLRDGIPVAVKSLSAESKQGTHEFLTEIDMISNVRHPNLVQLIGCCIEGSNRMLVYEYLDNNSLASALLGPKSKQIVLDWPKRAAICIGTAQGLAFLHKDAKPHIVHRDIKASNILLDKDLNPKIGDFGLAKLFPDNVTHLSTRVAGTTGYLAPEYALLGQLTKKVDIYSFGVLILETISGRSSSKSAWGENLMFLVEWAWTLRGEDRLLDIVDPELSEYPEDEVLRFVKVALFCTQAASHQRPSMKQVVEMLSKEMSLDVKALTQPGFKDRAAKYFGGGSSQDSSSSRVHQGKKPINPFITSALLNSSSITMTQMQPR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02082 382 FunFam cold-responsive protein kinase 1 17 121 - -
Eupl05g02082 382 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 338 - -
Eupl05g02082 382 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Eupl05g02082 382 Pfam Protein kinase domain 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02082 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Eupl05g02082 382 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Eupl05g02082 382 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Eupl05g02082 382 SMART serkin_6 46 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02082 382 SUPERFAMILY Protein kinase-like (PK-like) 27 316 IPR011009 -
Eupl05g02082 382 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g02082 382 CDD STKc_IRAK 52 318 - -
Eupl05g02082 382 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02082 Eupl-Chr5 46959394 46967820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02082 34 329 Receptor kinase-like Gene Family AT1G53420 53.199 1.90e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl05g02082 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02082 - - msin:131243997 536.954