Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02062 ATGGAAGGAGGAGGTGGTTTCGGGTACGAACTTTTAGAAAGGACCCCTCATTTGCTTCGACCCATTCCTCCATTAACAGCCATAGAGAGGTTTCTATGGAGTCCAAGCGATTCCTCACAGAAACAGATTGCAAGAGGGGTTAAAAAGAGAGATTATTCACTCGTTTCTACTAATTGGTTTTGTGAATCTTCGTCTTATTGTGGTGCAATCGATGGTTCTGCAAGTGGGTTTTCACTGTCGAATCTTCAAGATATGAGCTTTGTTGATGGCTTGTTTGTAGATGGGGAGTCTCTTAGCTGGACAAATGAGATAAATAACAAAGTGGGTTTGAGAGGAGAAATGAAATTTGCAGAGAAGAACACAGGTAGGGTGGAGAAGAGAGTGAAGGGTGGCTCTTCTACTACTTTGATTAAAGGGCAGTGGACAGATGAAGAGGACAGCAGGTTACTGGTTATATTGGTGAAGCAACATGGTGTTAGGAAATGGGCTCAGATTGCTCAGAAGTTGGTAGGTCGGGCTGGGAAGCAGTGTCGAGAAAGATGGCATAATCATCTACGTCCTGATATCAAGAAGGATACATGGAGTGAAGAAGAAGAAAGACTCTTAGTTGAAGCCCATGAGAAGATTGGGAACAGATGGGCTGAGATTGCAAAGCACATCCCCGGAAGAACAGAAAACTCGATAAAGAACCACTGGAATGCCACCAAAAGAAGGCAGAATTCAAGGAGAAAGAAAAAAAAGGTAGTATGCCAAGGAGGAAAATCTCAGCCATCAATTCTACAAGACTACATCAGAAGCAAAAGCATCAAGGATATCTCCACCCCCACCACAAACACACTTCCAGAACCATCCGATTCCTCGTTCACTGATGATTCTTCATCACTGCTTTCCCATACATATGACGAGGAACTACTCTTCATACAAAAATTCTTCGAAGACATCTACAAACAACCATCGGATGCCACAGTTATGGGGTCCACAAATGAGAAAACAATTCATAATGATCAGAAACTTCAAAATCCTCTAATCTTTGATTCTCTTGATTTTCATGATCAACTCAATGATGACCATCCATTTGTGGAGATGGATGAATGTACTGGCTACTCGTCTTCTACCCCAATCACAGAAAACATCCAAAAAGAAGAAACTAACGCATCATCCCATATGTATTCAGATCTTTACCTCTCCTATCTATTGAATGGAGTCACTTCTTCGCCTTCATTCGACAACTACGAACACCTGAACATCGACCTGCTGAGTGATCAAACTTCTTACAATGGCAAGAAAGAGATGGATTTGATAGAGATGGTTTCATCTTCTCAGTTCTCTCAGAGCAGTAACAGCAGCTTCTGA 1353 0.4198 MEGGGGFGYELLERTPHLLRPIPPLTAIERFLWSPSDSSQKQIARGVKKRDYSLVSTNWFCESSSYCGAIDGSASGFSLSNLQDMSFVDGLFVDGESLSWTNEINNKVGLRGEMKFAEKNTGRVEKRVKGGSSTTLIKGQWTDEEDSRLLVILVKQHGVRKWAQIAQKLVGRAGKQCRERWHNHLRPDIKKDTWSEEEERLLVEAHEKIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKKKKVVCQGGKSQPSILQDYIRSKSIKDISTPTTNTLPEPSDSSFTDDSSSLLSHTYDEELLFIQKFFEDIYKQPSDATVMGSTNEKTIHNDQKLQNPLIFDSLDFHDQLNDDHPFVEMDECTGYSSSTPITENIQKEETNASSHMYSDLYLSYLLNGVTSSPSFDNYEHLNIDLLSDQTSYNGKKEMDLIEMVSSSQFSQSSNSSF* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02062 450 Gene3D - 193 253 - -
Eupl05g02062 450 MobiDBLite consensus disorder prediction 234 255 - -
Eupl05g02062 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Eupl05g02062 450 MobiDBLite consensus disorder prediction 272 292 - -
Eupl05g02062 450 ProSiteProfiles SANT domain profile. 189 240 IPR017884 -
Eupl05g02062 450 MobiDBLite consensus disorder prediction 235 250 - -
Eupl05g02062 450 SMART sant 137 187 IPR001005 -
Eupl05g02062 450 SMART sant 190 238 IPR001005 -
Eupl05g02062 450 FunFam Transcriptional activator Myb isoform A 137 191 - -
Eupl05g02062 450 Pfam Myb-like DNA-binding domain 141 202 - -
Eupl05g02062 450 PANTHER MYB PROTEIN-RELATED 121 281 - -
Eupl05g02062 450 CDD SANT 141 185 IPR001005 -
Eupl05g02062 450 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Eupl05g02062 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 185 IPR017930 -
Eupl05g02062 450 Gene3D - 137 190 - -
Eupl05g02062 450 SUPERFAMILY Homeodomain-like 136 232 IPR009057 -
Eupl05g02062 450 CDD SANT 193 236 IPR001005 -
Eupl05g02062 450 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02062 Eupl-Chr5 46562069 46564241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02062 23 450 MYB Transcription Factor Family AT5G58850 40.041 6.99e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g02062 Myb_DNA-bind_6 9.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02062 K09422 - nnu:104601334 467.618