Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02021 ATGCTTTTGCAGATGTCGGATTCCAGAAGATCAAGGTATTCACGCTCTCGTTCCCCATATCGTCGGGGTAGTAGGTCTGTTTCAAGATCATTGTCGATGTCAAGAAGCCGGTCAAGAAGCCGAGACTCTATCGACGTTGAAAATCCCGGGAACAATCTCTATGTAACAGGCTTATCACCCCGGATCACAAAAAAAGAACTTGAGAAGCATTTCTCAAGTGAAGGAGGAACGGTGGTAGATGTTCACCTTGTGGTGGATCCTTGGACGAGGGAGTCTCGTGGCTTTGGGTTTGTGACTATGTCCACTGTGGAGGAAGCCAATCGCTGCCTCAAGTATCTGAATGGGTCGATAATTGAAGGTCGCGTCATCACTGTGGAGAAGGCAAGGAGGCGTAGAGGCCGGACACCAACCCCAGGCAAGTATCTTGGAGTCAGAACTATCCGTGTGCGCCGCCGATCTCCAAGCTACTCTCCTTACCGTCGGAACCATTATAGTTATTCCTCAGAGAGGGACAGGGATAGATCCTACTCCCCCCACTACAGCAGGCGCAGGTACCGCTCACGTTCTCACTCGCCATACAGCAGATCACCAGTCAGCAGGCGAAATCGGTCATATTCTCCTCACAACTCCAGGTCATACTCCCCACGGGATCGGTCTGTTTCACCTCACTACAGAAGGCGCGACCGATCTATTTCACCTTACTATGGAAGGCGTGACGGTTCTATTTCACCTTACTCTGGAAAGCGTGAGCGTTCTACTTCACCTTACTACAGAAGACGTTATCGTTCAATCTCCCGCAGTGTTTCACCAAGGGCTAGGAGGTCAAGGAGAAGCTACTCCCCCAGTTTGCCCCTCGGACCAAGAAGTTCGAGGAGGAGCTACTCTCGCAGCCTCACCCCTAGACCGAGAAGGAGCTCTAGGAGGAGTCCCTTGCGCAGTGCTTCACCCAGGCGGAGGAGGAGCTACTCCCGTAGCAGCTATTCTAGGAGCCAAAGTGTGAGCTCGGGTTCCAGATCAGTGTCATTGTCAAGGTCTCCGACACCTCGGTCCACTTCACCTTCACACTGA 1068 0.5225 MLLQMSDSRRSRYSRSRSPYRRGSRSVSRSLSMSRSRSRSRDSIDVENPGNNLYVTGLSPRITKKELEKHFSSEGGTVVDVHLVVDPWTRESRGFGFVTMSTVEEANRCLKYLNGSIIEGRVITVEKARRRRGRTPTPGKYLGVRTIRVRRRSPSYSPYRRNHYSYSSERDRDRSYSPHYSRRRYRSRSHSPYSRSPVSRRNRSYSPHNSRSYSPRDRSVSPHYRRRDRSISPYYGRRDGSISPYSGKRERSTSPYYRRRYRSISRSVSPRARRSRRSYSPSLPLGPRSSRRSYSRSLTPRPRRSSRRSPLRSASPRRRRSYSRSSYSRSQSVSSGSRSVSLSRSPTPRSTSPSH* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02021 355 MobiDBLite consensus disorder prediction 325 355 - -
Eupl05g02021 355 SUPERFAMILY RNA-binding domain, RBD 34 142 IPR035979 GO:0003676
Eupl05g02021 355 MobiDBLite consensus disorder prediction 218 234 - -
Eupl05g02021 355 MobiDBLite consensus disorder prediction 1 49 - -
Eupl05g02021 355 MobiDBLite consensus disorder prediction 282 296 - -
Eupl05g02021 355 MobiDBLite consensus disorder prediction 297 324 - -
Eupl05g02021 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Eupl05g02021 355 Gene3D - 4 136 IPR012677 -
Eupl05g02021 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 130 IPR000504 GO:0003723
Eupl05g02021 355 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 332 - -
Eupl05g02021 355 MobiDBLite consensus disorder prediction 129 355 - -
Eupl05g02021 355 MobiDBLite consensus disorder prediction 164 180 - -
Eupl05g02021 355 SMART rrm1_1 52 126 IPR000504 GO:0003723
Eupl05g02021 355 MobiDBLite consensus disorder prediction 20 34 - -
Eupl05g02021 355 CDD RRM_SF 53 126 - -
Eupl05g02021 355 MobiDBLite consensus disorder prediction 191 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02021 Eupl-Chr5 46061748 46065882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02021 52 134 Eukaryotic Initiation Factors Gene Family AT2G36660 37.349 2.60e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g02021 - - nnu:104601200 260.766