Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g02007 ATGCTTCAAATCCGTCTGATCAAGGATTCATCTTTGGAAAGTGGGGGAGGGGCGAAGCCCTTGCTAGCGGAGACTGTGACGGTGGCATGCCCTGATCACCTTGTTCTTGCCGATCTCCCTGTTGCTAAGAGTATTGGCACTGCAAGCACCGCTTCCCTTATTAAGACTGTTGGCCGTAGATCTCGTCGCCAGCTTGGTGAGCGAGTCCATTTCTGCGTTCGCTGTGATTTCCCCATTGCCATCTATGGCCGCTTGAGTCCTTGTGAGCATGCCTTCTGTCTGGACTGTGCTAGGAGCGATTCTAGCTGCTATTTATGCGAGGAGCGCATTCAGAAGATTCAGACAATTAAAATGATGGAGGGGATATTCATCTGTGCGGCCCCACACTGTCTCAAGTCCTTCCTAAAGAGGTCTGAATTTGAATCTCATATTCATGAGAGCCATGTGGACCTTCTACAACCCAATATAGAGAGAGAAGATGGCAGCGAATCAGATGCTTTCACTGCAACAAGGCCCTCCTCCATGGACCCGCATGCTAAACAATCTATCCCTGCAGATTCTTCTACCGCTCGTGCTCAGCCAAGGGCCAGTTTCTCACCCAATTCTAATTCTCAGCCCCATGATCTCGAAGACAAAGCTCGTCGCCAGCAACCCAGAGAACAGCCACCTCCCAAGCCAATTATACAGCCAAAGCCACCACCATTTTATGGTCGACACCAAAACCATCCGTCAGAGCTGCAGCCAGATAATATTCCACCCCAAGGCTTTGACAGGCCGGGGCCCTACAACCGCTTCCATCACCAACACAGCTTTGACATGCAGGGTGGCCCACTTTATCGGCGGGATTCTGATCAGTTTCCAGACAAACAACAAGGAATTCTATCCGAGTCTCCATTCCCTGACTACCCTCCTTTGCATTCTCATCAACCGCCTAATTTTGTGGTGCCAGTTAATGCAAGTCAAGGGCTGACTCCTCCTCCATTTAGTTATCCTCCTTTTCCTGCCGAGGGAGCTCAACCATTCTATAATGCTCATTATGAGACCCCGCGACCGGATTTGGCGTCAGAAGGTGGATCAGAACAGGGTTCATTGTTGGGTTTTCCACCAGCTCCAGCAGGGGGTATGAATTTTCCAGACAGTTATCCTCGGCCGTGGAATATGGGACCTGCAGGTGTGCCTTTCGAACAAATGCCGATGGGTCAAGGAATTCCAGAAGGCTACACAAACCTATCAGATTCTCAAGGGAGAGCTGTATTCTTCCAAGGTGATTATGGACGGGTGCTGGGAGGCTTGCCTCTGAATCCTCCTCCGCCTATGGGCAATAAGGGATTAGAACCACAACAGGGTGGTAGTGCTTCGGATCACAAGGATGGCAAGGGTGTGTTGGCGCCACTGCCGCTGCCACTCCCACCACCTCCACCACCTCCGCCTCACCTTTCACATGTCAAACGGGGAAAATTCTCTAATTCTGGCGATTCAGGTTGGGAGGCACAGGGCTATGGGTGGCAAAATGAGAAGAATGATGGGTTTGGAAGTGGCCAGGACTAG 1548 0.511 MLQIRLIKDSSLESGGGAKPLLAETVTVACPDHLVLADLPVAKSIGTASTASLIKTVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSSCYLCEERIQKIQTIKMMEGIFICAAPHCLKSFLKRSEFESHIHESHVDLLQPNIEREDGSESDAFTATRPSSMDPHAKQSIPADSSTARAQPRASFSPNSNSQPHDLEDKARRQQPREQPPPKPIIQPKPPPFYGRHQNHPSELQPDNIPPQGFDRPGPYNRFHHQHSFDMQGGPLYRRDSDQFPDKQQGILSESPFPDYPPLHSHQPPNFVVPVNASQGLTPPPFSYPPFPAEGAQPFYNAHYETPRPDLASEGGSEQGSLLGFPPAPAGGMNFPDSYPRPWNMGPAGVPFEQMPMGQGIPEGYTNLSDSQGRAVFFQGDYGRVLGGLPLNPPPPMGNKGLEPQQGGSASDHKDGKGVLAPLPLPLPPPPPPPPHLSHVKRGKFSNSGDSGWEAQGYGWQNEKNDGFGSGQD* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g02007 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Eupl05g02007 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 504 IPR040383 GO:0016567|GO:0061630
Eupl05g02007 515 MobiDBLite consensus disorder prediction 464 480 - -
Eupl05g02007 515 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Eupl05g02007 515 MobiDBLite consensus disorder prediction 151 312 - -
Eupl05g02007 515 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Eupl05g02007 515 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Eupl05g02007 515 MobiDBLite consensus disorder prediction 151 165 - -
Eupl05g02007 515 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Eupl05g02007 515 MobiDBLite consensus disorder prediction 427 515 - -
Eupl05g02007 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 148 IPR013087 -
Eupl05g02007 515 MobiDBLite consensus disorder prediction 166 206 - -
Eupl05g02007 515 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g02007 Eupl-Chr5 45825336 45836023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g02007 1 390 C2H2 Transcription Factor Family AT5G01160 49.370 2.91e-105 317