Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01984 ATGGTAGTCAGCGATGGTGTTGATGGTGGAAATGTAGTCAGAGGCGGAAGTGGGTTGGAGGACCAAGTTAAGGGGCCATGGTCTCCTGAAGAAATAGCGATTCTAAGTCGACTGGTGAGTAAGCTCGGGGCGAGGAATTGGAGCCTCATCACTCGAGAATTCGCCGGGCGGTCTAGCAAGTGGTACCGGCTCCGTTGGTGTAATCAGCTTGATCCTTGCGTCAAACGCAAGCCCTTCACCGGTAACTGCAAAATATATCTGAGGTTATGGTGTGGTGTGGATAGGACATATAAAAATATTGTTCATGAAGCTAAAATCACAGAGGTGGGAACCACCGTTGAGATATGGTATGCATATGTTGCAGATTCGATTACAGGGTGA 381 0.4829 MVVSDGVDGGNVVRGGSGLEDQVKGPWSPEEIAILSRLVSKLGARNWSLITREFAGRSSKWYRLRWCNQLDPCVKRKPFTGNCKIYLRLWCGVDRTYKNIVHEAKITEVGTTVEIWYAYVADSITG* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01984 126 SMART sant 23 72 IPR001005 -
Eupl05g01984 126 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Eupl05g01984 126 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Eupl05g01984 126 ProSiteProfiles Myb-like domain profile. 19 70 IPR001005 -
Eupl05g01984 126 Gene3D - 23 75 - -
Eupl05g01984 126 PANTHER MYB PROTEIN-RELATED 24 80 - -
Eupl05g01984 126 CDD SANT 26 68 IPR001005 -
Eupl05g01984 126 Pfam Myb-like DNA-binding domain 24 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01984 Eupl-Chr5 45393720 45397245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01984 19 80 MYB Transcription Factor Family AT3G55730 67.742 1.28e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl05g01984 Myb_DNA-binding 3.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01984 K09422 - nnu:104601164 113.62