Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01983 ATGGCAACTGCAGATAAACCCCAAGTTGATGTAGAAGAAGGGGGTCGGCGTCGTTCCGTCGCCAGAAGCGACGGAGGGAGTGATGGAAGCGTCTGTTTCTCCGATGCCGAAGACGGATCCTGGCATTCTCCGTTTAATTCCAATGGCGGTGGATCATACGATGATTATAGGTTGTCTAGTGTGTCTGATCCCGAGATTGGAGGGGTTTCGGAGCCGCACAGGAACTCTTCGACGTCAGATTGTTCGGTAGAAGTGGATTTGGAAAGTGGTGTTCCGGAGATTAAGGTGCATTTAGCGAAAGTTGAGAAGGACTGTAGGATTTGTCATCTTAGCTTGGAGACCGCTAATCAAGAATCTGGAATTCCTATTGAACTGGGTTGTTCTTGCAAGAACGATTTGGCTGCGGCACATAAGAACTGCGCCGAGGCCTGGTTCAAGATAAAGGGGAACAAAACCTGTGAGATTTGTGGTGCGACTGCACGCAATGTTGTCGGTGCAAATGAAACCGAGTTTATGGAGCAATGGAATGAGACGAGTAGTGTCATGGCAACAACAGCACCTGCACCCCCCACAGAGACCCGAACTTTCTGGCATGGCCACCGCTTCCTGAATTTCCTGCTCGCCTGTATGGTCTTCGCCTTTGTCATCTCTTGGCTTTTTCACTTCAATGTATCTTGA 678 0.4941 MATADKPQVDVEEGGRRRSVARSDGGSDGSVCFSDAEDGSWHSPFNSNGGGSYDDYRLSSVSDPEIGGVSEPHRNSSTSDCSVEVDLESGVPEIKVHLAKVEKDCRICHLSLETANQESGIPIELGCSCKNDLAAAHKNCAEAWFKIKGNKTCEICGATARNVVGANETEFMEQWNETSSVMATTAPAPPTETRTFWHGHRFLNFLLACMVFAFVISWLFHFNVS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01983 225 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Eupl05g01983 225 MobiDBLite consensus disorder prediction 9 23 - -
Eupl05g01983 225 MobiDBLite consensus disorder prediction 1 47 - -
Eupl05g01983 225 MobiDBLite consensus disorder prediction 61 80 - -
Eupl05g01983 225 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Eupl05g01983 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 167 IPR013083 -
Eupl05g01983 225 SMART ringv_2 104 157 IPR011016 GO:0008270
Eupl05g01983 225 SUPERFAMILY RING/U-box 102 160 - -
Eupl05g01983 225 PANTHER ZINC FINGER, RING-CH-TYPE 19 225 - -
Eupl05g01983 225 CDD RING_CH-C4HC3_MARCH 105 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01983 Eupl-Chr5 45384869 45389278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01983 45 224 C3H Transcription Factor Family AT5G05830 60.215 1.91e-72 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01983 - - nnu:104597049 365.925