Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl05g01983 | ATGGCAACTGCAGATAAACCCCAAGTTGATGTAGAAGAAGGGGGTCGGCGTCGTTCCGTCGCCAGAAGCGACGGAGGGAGTGATGGAAGCGTCTGTTTCTCCGATGCCGAAGACGGATCCTGGCATTCTCCGTTTAATTCCAATGGCGGTGGATCATACGATGATTATAGGTTGTCTAGTGTGTCTGATCCCGAGATTGGAGGGGTTTCGGAGCCGCACAGGAACTCTTCGACGTCAGATTGTTCGGTAGAAGTGGATTTGGAAAGTGGTGTTCCGGAGATTAAGGTGCATTTAGCGAAAGTTGAGAAGGACTGTAGGATTTGTCATCTTAGCTTGGAGACCGCTAATCAAGAATCTGGAATTCCTATTGAACTGGGTTGTTCTTGCAAGAACGATTTGGCTGCGGCACATAAGAACTGCGCCGAGGCCTGGTTCAAGATAAAGGGGAACAAAACCTGTGAGATTTGTGGTGCGACTGCACGCAATGTTGTCGGTGCAAATGAAACCGAGTTTATGGAGCAATGGAATGAGACGAGTAGTGTCATGGCAACAACAGCACCTGCACCCCCCACAGAGACCCGAACTTTCTGGCATGGCCACCGCTTCCTGAATTTCCTGCTCGCCTGTATGGTCTTCGCCTTTGTCATCTCTTGGCTTTTTCACTTCAATGTATCTTGA | 678 | 0.4941 | MATADKPQVDVEEGGRRRSVARSDGGSDGSVCFSDAEDGSWHSPFNSNGGGSYDDYRLSSVSDPEIGGVSEPHRNSSTSDCSVEVDLESGVPEIKVHLAKVEKDCRICHLSLETANQESGIPIELGCSCKNDLAAAHKNCAEAWFKIKGNKTCEICGATARNVVGANETEFMEQWNETSSVMATTAPAPPTETRTFWHGHRFLNFLLACMVFAFVISWLFHFNVS* | 226 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl05g01983 | 225 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 97 | 163 | IPR011016 | GO:0008270 | |
Eupl05g01983 | 225 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Eupl05g01983 | 225 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Eupl05g01983 | 225 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Eupl05g01983 | 225 | Pfam | RING-variant domain | 105 | 156 | IPR011016 | GO:0008270 | |
Eupl05g01983 | 225 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 167 | IPR013083 | - | |
Eupl05g01983 | 225 | SMART | ringv_2 | 104 | 157 | IPR011016 | GO:0008270 | |
Eupl05g01983 | 225 | SUPERFAMILY | RING/U-box | 102 | 160 | - | - | |
Eupl05g01983 | 225 | PANTHER | ZINC FINGER, RING-CH-TYPE | 19 | 225 | - | - | |
Eupl05g01983 | 225 | CDD | RING_CH-C4HC3_MARCH | 105 | 157 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl05g01983 | Eupl-Chr5 | 45384869 | 45389278 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl05g01983 | 45 | 224 | C3H Transcription Factor Family | AT5G05830 | 60.215 | 1.91e-72 | 217 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl05g01983 | - | - | nnu:104597049 | 365.925 |