Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01955 ATGTATAAACTTGCTTCGGCCTCTTCTTCCCTCCCAACTCCCAAACCCTTTTGCTTTCTGGCTGCACAGAAAAACCCTAGTCCTGTCGGGTTCTCTTCGCTTACGAAAATGACCGCGGAAGCCGTGAACCCTAAAGCGTACCCACTCGCTGATGCGCAGCTCTCCATAACCATTCTTGACCTCATTCAACAAGCAGCCAACTACAAACAGCTCAAAAAGGGTGCCAATGAAGCAACCAAGACTTTGAACAGAGGCATTTCCGAGTTTGTAGTAATGGCGGCCGACACTGAACCGCTCGAAATCCTTCTCCATCTTCCTCTACTCGCAGAGGATAAGAATGTGCCCTATGTGTTTGTTCCTTCGAAACAAGCCCTCGGCCGAGCATGTGGAGTCACAAGACCAGTTATTGCTTGTTCTGTGACAAGCAACGAGGGAAGCCAGTTAAAACCCCAAATACAACAACTCAAGGATGCCATCGAGAAGCTCCTGATCTGA 495 0.4889 MYKLASASSSLPTPKPFCFLAAQKNPSPVGFSSLTKMTAEAVNPKAYPLADAQLSITILDLIQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKPQIQQLKDAIEKLLI* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01955 164 PRINTS High mobility group-like nuclear protein signature 44 57 IPR002415 GO:0003723|GO:0005730
Eupl05g01955 164 PRINTS High mobility group-like nuclear protein signature 118 130 IPR002415 GO:0003723|GO:0005730
Eupl05g01955 164 PRINTS High mobility group-like nuclear protein signature 74 84 IPR002415 GO:0003723|GO:0005730
Eupl05g01955 164 PRINTS High mobility group-like nuclear protein signature 57 72 IPR002415 GO:0003723|GO:0005730
Eupl05g01955 164 PRINTS Ribosomal protein L7A/RS6 family signature 116 130 IPR018492 -
Eupl05g01955 164 PRINTS Ribosomal protein L7A/RS6 family signature 71 85 IPR018492 -
Eupl05g01955 164 PRINTS Ribosomal protein L7A/RS6 family signature 90 103 IPR018492 -
Eupl05g01955 164 PRINTS Ribosomal protein L7A/RS6 family signature 106 116 IPR018492 -
Eupl05g01955 164 SUPERFAMILY L30e-like 42 162 IPR029064 -
Eupl05g01955 164 ProSitePatterns Ribosomal protein L7Ae signature. 109 126 IPR004037 GO:0042254|GO:1990904
Eupl05g01955 164 CDD SNU13 43 164 - -
Eupl05g01955 164 Gene3D - 35 164 IPR029064 -
Eupl05g01955 164 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 35 161 - -
Eupl05g01955 164 FunFam NHP2-like protein 1 homolog 37 164 - -
Eupl05g01955 164 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 59 147 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01955 Eupl-Chr5 45023035 45029897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01955 71 126 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 35.714 5.21e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01955 K12845 - ming:122057216 235.343