Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01944 ATGGCTTCTTCAGGGATCAACCATCTTTCTCATCCCTGCATCTACGGGCATTTTGTTTCATCTTATGGTGAGAGAAAGTCTCGCTTCATGAGATGGCTTAGTAAGATATTTAAGGGGGGTTCAAATCGTGGTGTAATGAATGGCCGGCATCCGCAGCTTCTTGGGGAAGAAAACATGGCTTGGCATTCTCCCAGTAGATCCGTGGATGATCGGTCTAGAGCCAACAACGAGGAAATGGACCGTGCAGTTGCACTTTCTATGGAGGAAGATTCAAGGAAACCGAATGGATATAGAAGGCGCACAGACAGTGATGCTGATCTTGCTAGAGCAATTGAAGAAAGCTGGAATGTCCCTTCATATCCTCCTTATGCTCCCACAAATTTTATCCTAAGTGGATATAGAGTTTGTGGTGGTTGCCACCGTGAAATAGGGTGTGGCAGTTATTTAGGATGTTTGGGAGCTTTTTGGCACCCCGAGTGCTTCTGCTGTCATAAATGTGGTCAGCCGATCACCGAGCATGAGTTTTCTTTGTCAGGGAGGGAACCATACCACAAGTCCTGTTTCAAAGAGTTGCACCATCCCAAATGTGACGTCTGCCATCTATTTATCCCAACAAATGGAGCTGGTTTAATCGAGTATAGATCTCATCCATTTTGGAGCCAAAAGTATTGTCCTTCACATGAGCATGATAACACAGCTCGTTGTTGTAGTTGTGAACGGTTAGAGTCATTGAATGCAAGGTACATTTCTTTGGGGGATGGAAGGAGTCTATGCTTTGAATGTATGGAGTCTGCTATCATGGATACCGGCGACTGCCAACCACTTTACCATGCCATTAGAGACTACTATGAAGGAATGAACATGAAACTAATTCAACAGATTCCCATGCTTCTGGTTGAAAGACAAGCGCTTAATGAAGCTATTGAAGGAGAGAAGAATGGTTATCATCACATGCCCGAGACAAGGGGTTTATGTCTTTCTGAGGAGCAGACTGTTAGCAGTATACATAGAAGGCCAAGAATTGGGGGAAACCGACTTATAGGTATGAAAACACATGCACAGAAGCTACCTCGGAAGTGTGAAGTTACAGCCATTCTTGTTTTGTACGGTCTCCCAAGATTACTAACAGGTTCTATTCTTGCTCATGAGTTGATGCATGGATGGTTACGTCTTGAAGGCTACCGTAATCTAAGCCCTGAGGTGGAGGAAGGTATCTGTCAGGTGCTCTCTTACATGTGGCTTGAATCAGAGGTCGTGTCTGGATCAAGAAGTATACCATCTTCATCGACGGCTTCTTCATCGTCCTCGTCGTCTAAAAAGGGTGGAAAATCCAATCTTGAAAAGAAGCTGGGTGAGTTCTTCATGCATCAGATATGTTATGACCCCTCCCCAGTCTATGGTGAGGGATTCAGAGCTGCCAATGCAGCTGTCAATCAGTATGGGTTACGTCGGACCCTGGATCATATTCGCCTGACTGGACACTTTCCTGTTTGA 1494 0.4505 MASSGINHLSHPCIYGHFVSSYGERKSRFMRWLSKIFKGGSNRGVMNGRHPQLLGEENMAWHSPSRSVDDRSRANNEEMDRAVALSMEEDSRKPNGYRRRTDSDADLARAIEESWNVPSYPPYAPTNFILSGYRVCGGCHREIGCGSYLGCLGAFWHPECFCCHKCGQPITEHEFSLSGREPYHKSCFKELHHPKCDVCHLFIPTNGAGLIEYRSHPFWSQKYCPSHEHDNTARCCSCERLESLNARYISLGDGRSLCFECMESAIMDTGDCQPLYHAIRDYYEGMNMKLIQQIPMLLVERQALNEAIEGEKNGYHHMPETRGLCLSEEQTVSSIHRRPRIGGNRLIGMKTHAQKLPRKCEVTAILVLYGLPRLLTGSILAHELMHGWLRLEGYRNLSPEVEEGICQVLSYMWLESEVVSGSRSIPSSSTASSSSSSSKKGGKSNLEKKLGEFFMHQICYDPSPVYGEGFRAANAAVNQYGLRRTLDHIRLTGHFPV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01944 497 FunFam Protein DA1-related 2 124 189 - -
Eupl05g01944 497 Pfam LIM domain 136 190 IPR001781 -
Eupl05g01944 497 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 161 - -
Eupl05g01944 497 SMART lim_4 135 187 IPR001781 -
Eupl05g01944 497 ProSitePatterns LIM zinc-binding domain signature. 136 170 IPR001781 -
Eupl05g01944 497 CDD LIM_DA1 136 188 - -
Eupl05g01944 497 PANTHER PROTEIN DA1-RELATED 2 32 496 IPR045218 -
Eupl05g01944 497 ProSiteProfiles LIM domain profile. 134 194 IPR001781 -
Eupl05g01944 497 MobiDBLite consensus disorder prediction 422 443 - -
Eupl05g01944 497 MobiDBLite consensus disorder prediction 56 75 - -
Eupl05g01944 497 MobiDBLite consensus disorder prediction 422 441 - -
Eupl05g01944 497 Pfam Protein DA1 285 492 IPR022087 -
Eupl05g01944 497 Gene3D Cysteine Rich Protein 130 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01944 Eupl-Chr5 44875998 44885260 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl05g01944 DA1-like 1.5e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01944 - - nnu:104597073 821.231