Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01927 ATGTGTTCGACTCAGACCGGCAGTTGGCTTATCGATTACATGGACGAGGTTCAAGCTACTGAGTTTATTTGGCCTCCTCAGATTATTAGTGATCAAACGTTTTCAAGTGACGATCTTCCGCTTGATGTTTCACGAACGGACGGGAGCTTCCATGAAAACTCGTGCTCGAAGAAAAGAGCTCGGGTGGAATCTTGTGCTGGACCAGGGACCAAAGCTTGTCGTGAAAAGATGCGACGGGACAGGCTTAATGACAAGTTCTTAGAGTTGTGTTCCATTTTGGAGCCGGGGAGGCCTCCGAAGACTGACAAGCTCATTATTTTGAGCGATGCAACCCGTCTTTTGAACCAGCTACATCTTGAAGCGCAGAAGCTTAAAGAAACAACTGAAGCACTCCAAGACACAATAAAAACCCTCAAGGCAGAGAAGATGGAGCTGCGAGAAGAGAAGGTAAGGCTCAAGTCAGAGAAGGAGAGGATGGAGCAGGGAGGGCATTTCGGGATGGGATTTCTTAGGAGGCCGCTTGCTATCGTTGCCGCTCTATTAACAGGGCTAACCATCGCTTTTCTGAATGATAGCTTTGCAGTTACTTTTAATGAGAAAGTAACAAGAACCGTGAGACAGTTTTCTCCACATTTAGCTGCAAAGATGAGGCCTCCTATGACGCCTGTTATTCGTGGGCGTCCATCAGCTAAAAGAGCTATTCATATATGTGGAAGGCCTCGTTGGATGTTTGTCTTTGTGTTCTCAGCTGCCAGTTGCATCCTCTGGTTTACTTCTTGTAGTCTCCTTACTGTCCTATGGGCATTTGTCATTGGTCTTCTAGCGACTGTCCTACATGCAAGCTTTAGAACACCTAACCTGAAGGCACGCCTGAACACGTTTCGTGAGGAATTTCGGGCAGTTTGGCGCAATTATATTGCAGCAGCTACTGCTGCTATTCTTATGAGAAACTGCTGTAGTCACCCTCATTTATATATTGTAGATCCCGAGGACCATCCAGAGGTCTGCACCGAGGGACAGCGGCCACCTAGCGATGATACCAACAAAGCCAGTTGTCGCCGAGAAAACATGTGTCTCAGGATTTTAGGACGTAAGAGCCGAGAAATCAAACAGAGGAACTTGGAAGAAACCCCCCGTAAACATTCTCGGCGTGGTACAGCTTCTTCTCGAGAAGCTGGGCAAAAGGGAGATAGTGAGGCTGGCGGTGGCGGTGATGCCAACGGAGGCTTGGTTGTTATGACGGGTGCCGCTTATGCCGTTAGTCTAGGTGCTGACAGCACTGCCTCTGGTGGTGATGGTGGCGGCAGCAGCCATGGTGGTGCTACTGGTGGCGGTGGTGGTGGTGATGGGGGTGGTTGTGGTGGTAGTTGA 1371 0.4916 MCSTQTGSWLIDYMDEVQATEFIWPPQIISDQTFSSDDLPLDVSRTDGSFHENSCSKKRARVESCAGPGTKACREKMRRDRLNDKFLELCSILEPGRPPKTDKLIILSDATRLLNQLHLEAQKLKETTEALQDTIKTLKAEKMELREEKVRLKSEKERMEQGGHFGMGFLRRPLAIVAALLTGLTIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPPMTPVIRGRPSAKRAIHICGRPRWMFVFVFSAASCILWFTSCSLLTVLWAFVIGLLATVLHASFRTPNLKARLNTFREEFRAVWRNYIAAATAAILMRNCCSHPHLYIVDPEDHPEVCTEGQRPPSDDTNKASCRRENMCLRILGRKSREIKQRNLEETPRKHSRRGTASSREAGQKGDSEAGGGGDANGGLVVMTGAAYAVSLGADSTASGGDGGGSSHGGATGGGGGGDGGGCGGS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01927 456 SMART finulus 72 123 IPR011598 GO:0046983
Eupl05g01927 456 CDD bHLH_AtILR3_like 71 146 - -
Eupl05g01927 456 MobiDBLite consensus disorder prediction 369 390 - -
Eupl05g01927 456 Pfam PRA1 family protein 165 291 IPR004895 -
Eupl05g01927 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 139 IPR036638 GO:0046983
Eupl05g01927 456 Coils Coil 107 162 - -
Eupl05g01927 456 Pfam Helix-loop-helix DNA-binding domain 70 117 IPR011598 GO:0046983
Eupl05g01927 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 117 IPR011598 GO:0046983
Eupl05g01927 456 PANTHER PRA1 PROTEIN 165 305 IPR004895 -
Eupl05g01927 456 MobiDBLite consensus disorder prediction 369 409 - -
Eupl05g01927 456 Gene3D - 70 150 IPR036638 GO:0046983
Eupl05g01927 456 MobiDBLite consensus disorder prediction 423 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01927 Eupl-Chr5 44701702 44723687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01927 1 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 50.595 3.03e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g01927 PRA1 4.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01927 K20393 - msin:131252772 269.626