Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01903 ATGGAGCAAGCTAGGTTCTGGATGTGGACGAGAAGGAAGCTCAGTACTGAGAGGTCTCATGTCCAAGCTCCGACGTCCACCTATAACGATTCATGGGAAGAACAAGCTTTTGCGGAAGATTCAGCTGGTCCTCTTGGAGGTTGTATATGGCCTCCTAGATCTTATTCTTGTAGCTTTTGTAGAAGGGAATTCAGGTCAGCTCAAGCCCTTGGTGGTCATATGAACGTACACAGGAGGGATAGAGCTAGGCTTAAGCAATCTCCAAGTCCCCAGAATGAAATTCTTCAACAAAACCCTAGTACATCATTGGCTGTTCAATACCCTAATTTTGTTGCATCACCTGCTCTCTCTCCTTCTAGGATTTCAGCCCCATCCACTCAAGAGAATTGCAGTGAACAAACTTTGGTCTCTCCTTCTTATTCTTCTACTATTGTTCAAGAACACCAAAAGTTATCCCTTTTTTCTGCTCCTCCATCATGTTCGGGCTCAGTCGCTGTTAGGGTTCTCACTGTCTCCGATTCAAAGGTTGAAGGAGAGAATAAGGCACAGGCTCAGGGGGAATATGTTAAGCTCGATACATCTTTGAACTTGAATTTGGTTGTGCGACATCGGAATAGGCCGACGGGATCGGGTGGTGATGATGATGAGGGAATCAGTAGCAAGAGACGGAGGAGTGATGCAACATCCTTGCCTTTCTTCCTTAAACCCAGCTCAGTTGATAGACATCATCATCATCTCCAATCGGAGGAGTTGGATCTTGAGCTCAGGCTTGGTGATCGGCCTAAGGTTGTTGAGTTGGGTTTGTTTTCTTGGAAAGAAACAGCTAACGAGGTGGTCTGGAACTCGGAAGATCATCAGGGTCCAAGCCATGTTAGGTCATACGAGTGCACCTTTTGTAAGAGAGGCTTCTCTAACGCACAGGCACTAGGTGGTCACATGAACATCCATCGAAGAGATAGGGCGAAGCTCAAACACCCCACTAATGACAACCAACTTTCTTTGAACATCGCAAGGAAGAATCCCTCGTATCCTCCTCCTGTTTCTCCCGACTACAACAAATTAGAATTGGAGTCTAGTGAAGGAAGAAGTTGCACCGTTAAGTGGCCTTGGATACTTTCCAGAGATGATTTTGTCGCTAGAGATGAGACCCATGTTGCAGAACTCAGGCAGCTTCCGTTGTTTGTCGAGACACCATCAAGCATCGGAAATGAAAAATCAAGCAGTCATGGTGGTAGACAAGAAGATACTAGCGATGTTTCAGCTGGGGTGGAGTTGGACCTCGAGCTTCGGCTAGGGCCTGAACCTCATGATACATCCACGACGAACCCGACGACGGGTACAATTGAATTCTTTTGA 1356 0.4653 MEQARFWMWTRRKLSTERSHVQAPTSTYNDSWEEQAFAEDSAGPLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSPSPQNEILQQNPSTSLAVQYPNFVASPALSPSRISAPSTQENCSEQTLVSPSYSSTIVQEHQKLSLFSAPPSCSGSVAVRVLTVSDSKVEGENKAQAQGEYVKLDTSLNLNLVVRHRNRPTGSGGDDDEGISSKRRRSDATSLPFFLKPSSVDRHHHHLQSEELDLELRLGDRPKVVELGLFSWKETANEVVWNSEDHQGPSHVRSYECTFCKRGFSNAQALGGHMNIHRRDRAKLKHPTNDNQLSLNIARKNPSYPPPVSPDYNKLELESSEGRSCTVKWPWILSRDDFVARDETHVAELRQLPLFVETPSSIGNEKSSSHGGRQEDTSDVSAGVELDLELRLGPEPHDTSTTNPTTGTIEFF* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01903 451 MobiDBLite consensus disorder prediction 435 451 - -
Eupl05g01903 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Eupl05g01903 451 Gene3D Classic Zinc Finger 52 107 - -
Eupl05g01903 451 Gene3D Classic Zinc Finger 273 342 - -
Eupl05g01903 451 MobiDBLite consensus disorder prediction 202 224 - -
Eupl05g01903 451 SUPERFAMILY beta-beta-alpha zinc fingers 53 316 IPR036236 -
Eupl05g01903 451 SMART c2h2final6 55 77 IPR013087 -
Eupl05g01903 451 SMART c2h2final6 294 316 IPR013087 -
Eupl05g01903 451 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Eupl05g01903 451 ProSitePatterns Zinc finger C2H2 type domain signature. 296 316 IPR013087 -
Eupl05g01903 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 321 IPR013087 -
Eupl05g01903 451 Pfam C2H2-type zinc finger 294 317 - -
Eupl05g01903 451 Pfam C2H2-type zinc finger 55 79 - -
Eupl05g01903 451 MobiDBLite consensus disorder prediction 398 451 - -
Eupl05g01903 451 MobiDBLite consensus disorder prediction 207 223 - -
Eupl05g01903 451 PANTHER OS07G0101800 PROTEIN 26 261 - -
Eupl05g01903 451 MobiDBLite consensus disorder prediction 74 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01903 Eupl-Chr5 44345550 44354907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01903 292 345 C2H2 Transcription Factor Family AT5G06070 55.556 1.01e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01903 zf-C2H2_6 4.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01903 - - nnu:104597112 328.946