Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01901 ATGACATACATAGAGATTCAGGTCCCTCAAAGTTACAAGCAGAGAGATCGGACGCCTATCTTACGCCAGGAGTGCTGGATTAGTTATCGTACGCCAAAAGCCAGCCAGAGCAGAACTGAAGACCCCATCTGGAGCCTGTACTTGCCGTACCTGGAGAGGCGAGGAAAGCTTAATCGTTGCTTGGTAGAGAGAGCCAGAAAGGGTCTCAGGAGTTTCTTCCAACAAGAAGAACTGGCAAACCGGTGGTGGGCTGGAAATGTGGCGATGGGAGGGGTCGACCCGTCGTCGGGCTCGTCCCTTCACCTTCGAAACCCAGACGACGACCACGGCGGTTTGGGCAGGCTCGGACCCAGAAGAGAACAAGAGCTCATGGATAACACCACCACCACCAACAGCAGCGGCAGCAATACTAACACCAACCCCAACGCCACCAACCAAAATCTCGAGGAAGACGAAAACGACCGAGAAACTGAAGACCAGAACACCGGCCACGAAATTGTTGAAGGCGGTAGTGGCCGTAGGCCCCGCGGCCGCCCACCTGGCTCTAAGAACAAACCAAAACCCCCCATAATTATCACTCGGGAAAGCCCAAATGCGCTTCGAAGCCACGTATTAGAGATCAGTAGCGGCAGTGACATCGCGGAGAGCATTTCAACTTTCGCACGGCGTCGACAACGGGGTGTCTGTGTTCTTAGCGGCAACGGTGTCGTCACTAATGTCACTCTCCGTCAGCCTGCCGCTCCAGGCGCCGTTGTCACGCTCCATGGACGCTTTGAGATACTATCACTATCAGGTGCGTTCCTGCCCTCACCGTCACCACCTGGTGCTACCGGGCTGACCATCTACCTAGCCGGCGGACAAGGGCAGGTGGTGGGCGGGAGCGTGGTTGGAGCACTTGTTGCGTCTGGACCAGTCATGGTGATTGCGGCAACATTCACAAATGCGACATACGAGAGGCTGCCGCTCGAAGAAGAACCCGCTGAAGAGGGAATGCAATTACCACAATCATCAGGAACTAGTGGTATTTCAGCATCTCAAACTCATGGTCTAGCTGATCCATCTTCCTTGCCAATCTACAATTTACCACCAAATCTGCTACCCAACGGTCAGATGCCCAATGACGTTTATTGGGCCCCTCCACCTCGCCCACCTCCATCTTATTAG 1164 0.5447 MTYIEIQVPQSYKQRDRTPILRQECWISYRTPKASQSRTEDPIWSLYLPYLERRGKLNRCLVERARKGLRSFFQQEELANRWWAGNVAMGGVDPSSGSSLHLRNPDDDHGGLGRLGPRREQELMDNTTTTNSSGSNTNTNPNATNQNLEEDENDRETEDQNTGHEIVEGGSGRRPRGRPPGSKNKPKPPIIITRESPNALRSHVLEISSGSDIAESISTFARRRQRGVCVLSGNGVVTNVTLRQPAAPGAVVTLHGRFEILSLSGAFLPSPSPPGATGLTIYLAGGQGQVVGGSVVGALVASGPVMVIAATFTNATYERLPLEEEPAEEGMQLPQSSGTSGISASQTHGLADPSSLPIYNLPPNLLPNGQMPNDVYWAPPPRPPPSY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01901 387 MobiDBLite consensus disorder prediction 325 387 - -
Eupl05g01901 387 ProSiteProfiles PPC domain profile profile. 197 337 IPR005175 -
Eupl05g01901 387 MobiDBLite consensus disorder prediction 94 192 - -
Eupl05g01901 387 MobiDBLite consensus disorder prediction 122 147 - -
Eupl05g01901 387 FunFam AT-hook motif nuclear-localized protein 200 328 - -
Eupl05g01901 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 137 379 IPR014476 GO:0003680
Eupl05g01901 387 Pfam Plants and Prokaryotes Conserved (PCC) domain 201 314 IPR005175 -
Eupl05g01901 387 Gene3D - 200 330 - -
Eupl05g01901 387 SUPERFAMILY AF0104/ALDC/Ptd012-like 197 325 - -
Eupl05g01901 387 CDD DUF296 201 284 IPR005175 -
Eupl05g01901 387 MobiDBLite consensus disorder prediction 102 121 - -
Eupl05g01901 387 MobiDBLite consensus disorder prediction 332 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01901 Eupl-Chr5 44279001 44281047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01901 78 387 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.939 5.01e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01901 - - nnu:104597337 435.647