Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01878 ATGGGGGAAGAAGTGCGGATGAGCGACTACGAAGGCGGTGTTGGCGGTGGAGATGAGGAACGAGTATTCGAGTGGGAGGTTGGGTTGCCGACCGCAGACGATCTCACCCCCTTGTCTCAGCTTTTGCTCCCACCGGAGCTCGCGTGTGCTTTCAGTATAACCCCCGAGCCTCGTCGAAGCCTTCTCGATGTGAATCGTGCGTCGCAGAACACGCTATCCAGTCTCCGTCGACAGATTCCGACCATCTCTTCCAACAATCATAACTCTTTGCCTGCTTTCACCGAGGATCGAACCCAGGACCCATCGGTCGTCCAAGGGGATGAATTTGACCCCGGGACTTTTACCAAAGATGGGTCGGAAACACGCAAGATTCGGAGAATGGAGAACGCTGAGGAGGCTGATTCGGTCTTGCGGATGGAGAATTCCAATGATGATCATTCTGCCCGGACCCAGAAACGGACCCGATTGGTGTGGACGCCCCAGCTTCATAAGCGGTTTGTGGATGTCGTCGCACATTTAGGTATTAAGAACGCTGTTCCGAAGACCATCATGCAGCTGATGAACGTGGAGGGCCTGACAAGAGAGAACGTCGCCAGCCATCTTCAGAAGTATCGGTTGTACCTGAAGAGGATGCAAGGATTGTCGAACGAGGGTCCATCCTCCTCTGACCAACTTTTTGCATCGACCCCTGTTCCGCAGAGCCTACATGACTCCAACGGGAATGGACATATGGCATATGAGGCGGCCTTGCTACCTACGCCGGTTCTTGGTGTGGTCCCCGGTCATGGCCATATGGGGATTCCAGTTGGTAATCCATCCGCCGTCTCCTATCATGGTTTCGAGTCTCATCCCTATAACATGTTTAGTGAACAGCAGAGAGATTGGTCTGGTATTGTGTCATATCCCCATGTTACGCCTAATGATAAATAA 930 0.528 MGEEVRMSDYEGGVGGGDEERVFEWEVGLPTADDLTPLSQLLLPPELACAFSITPEPRRSLLDVNRASQNTLSSLRRQIPTISSNNHNSLPAFTEDRTQDPSVVQGDEFDPGTFTKDGSETRKIRRMENAEEADSVLRMENSNDDHSARTQKRTRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSNGNGHMAYEAALLPTPVLGVVPGHGHMGIPVGNPSAVSYHGFESHPYNMFSEQQRDWSGIVSYPHVTPNDK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01878 309 MobiDBLite consensus disorder prediction 81 118 - -
Eupl05g01878 309 SUPERFAMILY Homeodomain-like 150 210 IPR009057 -
Eupl05g01878 309 MobiDBLite consensus disorder prediction 81 100 - -
Eupl05g01878 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 209 IPR017930 -
Eupl05g01878 309 Pfam Myb-like DNA-binding domain 157 205 IPR001005 -
Eupl05g01878 309 Gene3D - 149 212 - -
Eupl05g01878 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 8 283 IPR044841 GO:0003700|GO:0006355
Eupl05g01878 309 MobiDBLite consensus disorder prediction 218 240 - -
Eupl05g01878 309 FunFam Two-component response regulator 149 212 - -
Eupl05g01878 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 154 206 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01878 Eupl-Chr5 44023612 44025313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01878 1 237 G2-like Transcription Factor Family AT3G46640 59.671 1.84e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl05g01878 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01878 - - nnu:104597142 459.144